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NC_047714.1__YP_009778945.1__HOQ63_gp218__00218
Bact-VirNC_047714.1__YP_009778945.1__HOQ63_gp218__00218
Identity
- Accession:
- NC_047714 ↗
- Kingdom:
- phage
Quality
92.4
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Atlauavirus›
Synechococcus_phage_ACG-2014f_Syn7803US26
TaxID: 2790346
Cluster
View cluster (13 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-172
Domain cluster:
rep: SR-VP_0-2_scaffold_141_6534022_prodigal-single.1__X__X__00015__D2-167
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05704.19 best | Caps_synth | 130.9 | 8.70e-38 | 100.0% | 60.1% |
| PF04488.22 | Gly_transf_sug | 35.8 | 1.50e-08 | 50.3% | 94.6% |
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4mixA00 | 3.90.550.20 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › | 0.82 | 78.0 | 6.44e-01 | 100.0% | 83.7% |
| 7zllA01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.73 | 68.0 | 5.75e-01 | 100.0% | 77.4% |
| 6u4bA01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.71 | 66.0 | 5.42e-01 | 100.0% | 74.1% |
| 1ll0B00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.67 | 62.0 | 5.32e-01 | 100.0% | 66.3% |
| 1ulyA02 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.59 | 34.0 | 4.28e-01 | 73.4% | 93.1% |
| 1w55A01 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.55 | 50.0 | 4.73e-01 | 100.0% | 86.0% |
| 2k3jA00 | 1.10.287.2900 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.54 | 23.0 | 3.42e-01 | 84.0% | 96.9% |
| 4ysxC00 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.51 | 35.0 | 3.67e-01 | 96.4% | 77.1% |
| 1pswA01 | 3.40.50.2000 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; | 0.50 | 32.0 | 3.52e-01 | 91.1% | 76.9% |
ECOD (45)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4547228 | 7516.1.1.75 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Caps_synth | 0.89 | 86.0 | 6.54e-01 | 100.0% | 58.6% |
| 3587491 | 7516.1.1.75 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Caps_synth | 0.89 | 86.0 | 7.03e-01 | 100.0% | 63.2% |
| None | — | 0.88 | 85.0 | 6.34e-01 | 100.0% | 54.8% | |
| 3787900 | 7516.1.1.67 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Gly_transf_sug | 0.88 | 84.0 | 6.58e-01 | 100.0% | 74.2% |
| 3386735 | 7516.1.1.75 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Caps_synth | 0.88 | 85.0 | 6.84e-01 | 100.0% | 68.6% |
| 3176090 | 7516.1.1.67 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Gly_transf_sug | 0.88 | 84.0 | 6.46e-01 | 100.0% | 81.8% |
| 4015841 | 7516.1.1.0 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases | 0.87 | 83.0 | 6.76e-01 | 100.0% | 79.3% |
| 3191860 | 7516.1.1.67 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Gly_transf_sug | 0.86 | 83.0 | 6.75e-01 | 100.0% | 79.3% |
| 10305 | 7516.1.1.25 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › TcdA_TcdB | 0.86 | 82.0 | 5.83e-01 | 100.0% | 90.7% |
| 4021311 | 7516.1.1.0 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases | 0.86 | 81.0 | 6.53e-01 | 100.0% | 75.7% |
| 3631461 | 7516.1.1.67 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Gly_transf_sug | 0.86 | 82.0 | 6.82e-01 | 100.0% | 80.7% |
| 3191178 | 7516.1.1.67 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Gly_transf_sug | 0.86 | 81.0 | 6.31e-01 | 100.0% | 68.7% |
| None | — | 0.85 | 81.0 | 5.76e-01 | 100.0% | 89.2% | |
| 3632130 | 7516.1.1.67 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Gly_transf_sug | 0.85 | 82.0 | 6.67e-01 | 100.0% | 73.9% |
| 3179443 | 7516.1.1.67 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Gly_transf_sug | 0.85 | 81.0 | 6.75e-01 | 100.0% | 83.1% |
| 4016921 | 7516.1.1.67 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Gly_transf_sug | 0.85 | 81.0 | 6.70e-01 | 100.0% | 80.6% |
| 3187254 | 7516.1.1.67 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Gly_transf_sug | 0.85 | 81.0 | 6.55e-01 | 100.0% | 57.3% |
| 3196742 | 7516.1.1.67 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Gly_transf_sug | 0.84 | 80.0 | 6.51e-01 | 100.0% | 59.3% |
| 3183916 | 7516.1.1.67 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Gly_transf_sug | 0.84 | 80.0 | 7.06e-01 | 100.0% | 83.0% |
| 4801660 | 7516.1.1.25 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › TcdA_TcdB | 0.83 | 67.0 | 5.03e-01 | 82.2% | 100.0% |
| 3686694 | 7516.1.1.67 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Gly_transf_sug | 0.83 | 79.0 | 6.27e-01 | 100.0% | 70.8% |
| 4626081 | 7516.1.1.67 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Gly_transf_sug | 0.83 | 79.0 | 7.10e-01 | 99.4% | 95.5% |
| 3744329 | 7516.1.1.0 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases | 0.83 | 64.0 | 6.31e-01 | 79.9% | 84.4% |
| 4170791 | 7516.1.1.67 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Gly_transf_sug | 0.82 | 79.0 | 6.32e-01 | 100.0% | 82.0% |
| 4021161 | 7516.1.1.0 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases | 0.82 | 78.0 | 6.20e-01 | 100.0% | 62.6% |
| 3463791 | 7516.1.1.110 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Gly_transf_sug, Gb3_synth | 0.81 | 78.0 | 6.24e-01 | 100.0% | 65.7% |
| 3296832 | 7516.1.1.165 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Gly_transf_sug, Gb3_synth, Caps_synth | 0.81 | 78.0 | 6.19e-01 | 100.0% | 64.6% |
| 3533597 | 7516.1.1.110 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Gly_transf_sug, Gb3_synth | 0.81 | 77.0 | 6.28e-01 | 100.0% | 69.8% |
| 3366906 | 7516.1.1.110 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Gly_transf_sug, Gb3_synth | 0.80 | 76.0 | 5.86e-01 | 100.0% | 59.7% |
| None | — | 0.79 | 67.0 | 6.56e-01 | 87.6% | 93.9% | |
| 4013726 | 7516.1.1.67 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Gly_transf_sug | 0.78 | 75.0 | 6.15e-01 | 100.0% | 70.3% |
| 3346202 | 7516.1.1.0 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases | 0.73 | 68.0 | 5.51e-01 | 100.0% | 74.8% |
| 3182572 | 7516.1.1.20 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_transf_34 | 0.71 | 67.0 | 5.36e-01 | 100.0% | 95.8% |
| 3944247 | 7516.1.1.6 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_transf_8 | 0.71 | 66.0 | 4.86e-01 | 100.0% | 51.5% |
| 3710476 | 7516.1.1.6 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_transf_8 | 0.70 | 52.0 | 5.00e-01 | 77.5% | 96.9% |
| 3580109 | 7516.1.1.6 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_transf_8 | 0.68 | 62.0 | 6.20e-01 | 97.6% | 97.7% |
| 3378339 | 7516.1.1.6 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_transf_8 | 0.66 | 62.0 | 5.08e-01 | 100.0% | 63.7% |
| 3641707 | 7516.1.1.0 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases | 0.66 | 61.0 | 5.01e-01 | 100.0% | 64.7% |
| 3219405 | 7516.1.1.6 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_transf_8 | 0.66 | 61.0 | 5.28e-01 | 100.0% | 72.5% |
| 3831741 | 7516.1.1.61 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Mannosyl_trans3 | 0.66 | 61.0 | 5.10e-01 | 100.0% | 69.3% |
| 3660192 | 7516.1.1.156 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › PF28460 | 0.65 | 60.0 | 4.69e-01 | 100.0% | 60.8% |
| 3683961 | 7516.1.1.0 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases | 0.58 | 52.0 | 4.76e-01 | 94.7% | 76.2% |
| 3973432 | 7523.1.1.15 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › LysR_substrate | 0.58 | 30.0 | 3.75e-01 | 98.2% | 81.0% |
| 1936485 | 2007.2.1.3 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins › FMN_red | 0.52 | 36.0 | 3.15e-01 | 70.4% | 82.5% |
| 5045508 | 304.54.1.0 ↗ | a+b two layers › Alpha-beta plaits › CcmK-like › CcmK-like | 0.50 | 33.0 | 3.56e-01 | 74.0% | 77.2% |
D2
high
residues 188-259
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4hyqA00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.52 | 43.0 | 3.15e-01 | 100.0% | 53.4% |