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NC_047714.1__YP_009778958.1__HOQ63_gp231__00231

Bact-Vir

NC_047714.1__YP_009778958.1__HOQ63_gp231__00231

Identity

Accession:
NC_047714 ↗
Kingdom:
phage

Quality

83.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Atlauavirus› Synechococcus_phage_ACG-2014f_Syn7803US26

TaxID: 2790346

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-62
PDB
Domain cluster: representative
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u3eM01 3.90.75.20 Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › 0.83 71.0 5.61e-01 100.0% 47.2%
1nqzA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.66 47.0 3.27e-01 76.9% 64.9%
5j3tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 46.0 3.51e-01 80.8% 56.3%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 42.0 3.60e-01 73.1% 44.0%
6guuA01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 41.0 4.10e-01 100.0% 72.2%
5jenA02 3.90.640.20 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › Heat-shock cognate protein, ATPase 0.59 46.0 3.82e-01 88.5% 80.8%
4nqrA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.58 41.0 3.07e-01 78.8% 91.6%
5c0pA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.58 44.0 2.81e-01 82.7% 27.1%
2greA01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.58 46.0 3.07e-01 92.3% 94.5%
6gfaA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.57 47.0 4.68e-01 96.2% 100.0%
1u04A02 3.90.70.180 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.57 45.0 3.67e-01 94.2% 98.2%
4xq7A01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.55 42.0 3.16e-01 90.4% 71.8%
3itwA02 3.30.720.110 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.55 39.0 3.89e-01 78.8% 82.1%
4an6B00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.55 37.0 2.71e-01 71.2% 81.3%
2af5A01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.55 36.0 3.64e-01 73.1% 66.7%
3h6qA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.55 44.0 3.22e-01 96.2% 75.6%
1e0bA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 40.0 3.85e-01 98.1% 68.9%
3h6rA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 43.0 3.25e-01 96.2% 79.6%
1a73A00 3.90.75.10 Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › Homing Intron 3 (I-ppo) Encoded Endonuclease; Chain A 0.54 44.0 3.28e-01 100.0% 46.3%
4a7kA03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 42.0 3.19e-01 96.2% 82.3%
2arzA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 43.0 3.22e-01 96.2% 93.3%
4dt4A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.53 40.0 3.91e-01 96.2% 77.2%
3d9wA02 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.52 42.0 3.54e-01 98.1% 77.5%
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 37.0 3.65e-01 100.0% 71.4%
1b69A00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.52 39.0 3.66e-01 84.6% 76.8%
2lezA00 3.30.2450.10 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › Secreted effector protein pipB2 0.52 42.0 3.42e-01 100.0% 56.7%
1o97D01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.52 41.0 2.89e-01 92.3% 25.9%
2wvxA01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.52 41.0 2.68e-01 98.1% 59.2%
3bqxA00 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 42.0 3.20e-01 98.1% 79.1%
2k4rA00 2.40.20.10 Mainly Beta › Beta Barrel › Plasminogen Kringle 4 › Plasminogen Kringle 4 0.51 40.0 3.60e-01 90.4% 98.7%
2q18X01 3.10.330.40 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.51 34.0 3.15e-01 71.2% 60.0%
2k7iA01 3.30.160.160 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YegP-like 0.51 37.0 3.80e-01 76.9% 89.6%
1u5kA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 36.0 3.21e-01 78.8% 80.5%
1a15A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 34.0 3.26e-01 100.0% 56.7%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 41.0 3.99e-01 98.1% 87.1%
2i2lA01 2.10.70.50 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.50 37.0 3.73e-01 94.2% 86.5%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3405466 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.65 52.0 3.73e-01 92.3% 58.8%
3400005 4.8.1.2 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.64 44.0 4.30e-01 100.0% 65.0%
3419793 5.1.10.3 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › DUF295 0.62 48.0 3.64e-01 86.5% 33.3%
3604320 375.1.1.50 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_4 0.62 34.0 3.79e-01 88.5% 67.5%
3307718 2484.1.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.62 52.0 4.06e-01 98.1% 49.2%
4117297 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 49.0 4.50e-01 90.4% 81.4%
3388887 4.8.1.2 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.61 42.0 4.02e-01 100.0% 60.0%
3330369 387.1.1.0 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related 0.60 48.0 4.94e-01 92.3% 100.0%
3714496 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.60 47.0 3.32e-01 90.4% 51.6%
3925471 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.58 40.0 3.90e-01 100.0% 63.3%
4114145 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 43.0 3.25e-01 100.0% 32.3%
3591046 2002.3.1.2 ↗ a/b barrels › TIM beta/alpha-barrel › Glycoside hydrolase/deacetylase › Glycoside hydrolase/deacetylase › Polysacc_deac_1 0.58 47.0 2.92e-01 94.2% 37.8%
3260733 220.1.1.158 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_LRR1 0.58 44.0 3.50e-01 82.7% 67.3%
3256797 2004.1.1.19 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.57 45.0 3.25e-01 94.2% 56.7%
3925755 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.57 41.0 3.96e-01 90.4% 66.7%
4488182 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 38.0 4.06e-01 82.7% 90.0%
3626927 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.57 41.0 4.12e-01 100.0% 74.5%
5053250 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 46.0 4.39e-01 96.2% 92.3%
3491126 3382.1.1.1 ↗ alpha arrays › Protein Wnt-8 › Protein Wnt-8 › Protein Wnt-8 › wnt 0.57 45.0 2.79e-01 88.5% 26.3%
3258369 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 37.0 4.05e-01 76.9% 94.7%
4379563 375.1.1.289 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF5679 0.56 44.0 4.67e-01 90.4% 97.8%
3888390 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.56 45.0 2.74e-01 94.2% 24.8%
5037381 375.1.1.19 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD 0.56 41.0 4.19e-01 86.5% 84.0%
4253165 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.56 43.0 3.29e-01 90.4% 37.1%
3933015 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 45.0 4.59e-01 94.2% 100.0%
3285829 4.1.1.425 ↗ beta barrels › SH3 › SH3 › SH3 › RNHCP 0.55 46.0 3.70e-01 94.2% 73.3%
3413965 5.1.4.463 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_NWD2_C 0.55 41.0 2.46e-01 82.7% 19.0%
4929725 375.1.1.289 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF5679 0.55 43.0 4.51e-01 92.3% 100.0%
3707023 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 45.0 3.73e-01 96.2% 73.0%
5018514 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 45.0 3.45e-01 100.0% 88.1%
3253640 219.1.1.6 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_2 0.54 45.0 2.92e-01 98.1% 73.1%
4931231 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 33.0 2.28e-01 88.5% 15.0%
4975559 2005.1.1.10 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ETF 0.53 42.0 2.92e-01 94.2% 27.4%
1839935 6.1.1.0 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.53 41.0 3.16e-01 96.2% 85.8%
3277727 4.8.1.43 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › RNHCP 0.53 43.0 3.64e-01 94.2% 82.1%
4031136 6043.1.1.3 ↗ a+b two layers › yfeY-like › yfeY-like › yfeY-like › CAP_assoc_N 0.52 37.0 3.62e-01 98.1% 68.3%
4967209 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 41.0 3.62e-01 98.1% 67.8%
4501723 4.8.1.45 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Peptidase_U57 0.51 39.0 3.90e-01 90.4% 100.0%
4943922 2005.1.1.122 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ETF_alpha 0.51 39.0 2.77e-01 94.2% 26.7%
4946886 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.50 35.0 3.59e-01 75.0% 80.0%
3999704 391.1.2.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.50 37.0 3.16e-01 100.0% 43.5%
D2 high residues 71-185
PDB
Domain cluster: rep: OP056089.1__UYD72102.1__X__00002__D5-102
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u3eM01 3.90.75.20 Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › 0.83 72.0 7.54e-01 96.5% 99.1%
1b3qA04 2.40.50.180 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › CheA-289, Domain 4 0.66 24.0 3.16e-01 80.0% 57.1%
2cs7A00 3.10.50.90 Alpha Beta › Roll › Chitinase A; domain 3 › 0.62 25.0 3.48e-01 81.7% 74.5%
1v5rA00 3.30.920.20 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Gas2-like domain 0.58 31.0 3.36e-01 88.7% 59.8%
2kd2A01 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.58 36.0 4.06e-01 84.3% 84.5%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3965202 378.1.1.19 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_3 0.66 58.0 5.95e-01 93.9% 98.2%