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NC_047717.1__YP_009779444.1__HOQ66_gp201__00031

Bact-Vir

NC_047717.1__YP_009779444.1__HOQ66_gp201__00031

Identity

Accession:
NC_047717 ↗
Kingdom:
phage

Quality

85.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Brizovirus› Cyanophage_S-RIM12_isolate_W1_08_0910

TaxID: 2790660

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 44-84
PDB
Domain cluster: rep: IMGVR_UViG_3300045988_050077-3300045988-Ga0495776_132136_4883_5203__D66-99
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3hshE00 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.70 55.0 5.16e-01 100.0% 70.9%
1yu0A01 2.10.10.30 Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › 0.68 54.0 5.11e-01 100.0% 74.5%
3n3fA01 3.40.1620.70 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › 0.66 52.0 5.16e-01 100.0% 90.7%
1x31C01 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.61 46.0 3.63e-01 95.1% 36.2%
4y9tA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.59 45.0 3.19e-01 90.2% 26.9%
1rl2A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 45.0 4.07e-01 85.4% 80.4%
3lifA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 42.0 3.49e-01 90.2% 53.3%
6ijfC01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.56 46.0 3.66e-01 100.0% 49.5%
2p25A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.55 37.0 2.78e-01 70.7% 41.2%
3mqgA02 2.20.70.110 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.54 41.0 4.23e-01 95.1% 94.9%
5llwA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 38.0 3.28e-01 95.1% 44.6%
6ziwI01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 43.0 3.57e-01 95.1% 94.9%
3ejgA00 3.40.220.10 Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 0.52 39.0 2.79e-01 95.1% 38.2%
1a7tA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.50 39.0 2.60e-01 100.0% 28.2%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3917719 3761.1.1.2 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Collagen_trimer 0.72 56.0 5.56e-01 100.0% 84.4%
3987740 3761.1.1.0 ↗ beta duplicates or obligate multimers › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related › Major tropism determinant (Mtd) trimerization domain-related 0.66 50.0 5.05e-01 100.0% 87.5%
5071089 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 50.0 4.76e-01 95.1% 76.0%
4927153 375.1.1.63 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular 0.59 47.0 4.40e-01 95.1% 76.4%
5011248 284.1.1.9 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › TrmI-like_N 0.56 40.0 3.60e-01 80.5% 55.4%
1214535 211.1.1.1 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.56 37.0 3.38e-01 70.7% 79.0%
3804735 822.1.1.3 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_ATXR3 0.55 40.0 3.70e-01 85.4% 83.1%
4983462 12.1.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.55 42.0 3.76e-01 90.2% 81.5%
4963965 873.1.1.22 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › PF25939 0.54 42.0 2.98e-01 97.6% 55.0%
3522928 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.54 38.0 3.68e-01 85.4% 64.8%
3527717 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.53 39.0 3.83e-01 97.6% 84.9%
3466016 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.53 35.0 3.08e-01 100.0% 41.4%
3208633 2004.1.1.768 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_11, AAA_12, AAA_19 0.53 36.0 2.01e-01 75.6% 4.8%
4011234 4291.1.1.0 ↗ beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein 0.51 37.0 2.24e-01 90.2% 38.7%
3243535 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.50 39.0 2.26e-01 100.0% 95.7%