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NC_047717.1__YP_009779486.1__HOQ66_gp159__00073

Bact-Vir

NC_047717.1__YP_009779486.1__HOQ66_gp159__00073

Identity

Accession:
NC_047717 ↗
Kingdom:
phage

Quality

89.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Brizovirus› Cyanophage_S-RIM12_isolate_W1_08_0910

TaxID: 2790660

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-71
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.66 47.0 4.05e-01 74.3% 56.9%
3rhaA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.66 46.0 2.82e-01 74.3% 19.6%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.61 44.0 3.76e-01 75.7% 50.5%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.60 50.0 4.92e-01 92.9% 88.2%
1ltlA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.60 38.0 4.39e-01 74.3% 91.8%
2v3sA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.60 44.0 4.03e-01 78.6% 97.9%
3wqbA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.59 41.0 3.12e-01 72.9% 72.9%
1xe0C00 2.60.120.340 Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain 0.59 39.0 3.44e-01 74.3% 46.5%
2jdaB00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.59 48.0 3.82e-01 90.0% 62.0%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.59 40.0 3.06e-01 72.9% 29.9%
4pofA03 2.20.28.10 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.59 38.0 4.29e-01 74.3% 92.0%
4f07E00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 51.0 4.03e-01 98.6% 71.8%
4kncA02 2.60.120.1380 Mainly Beta › Sandwich › Jelly Rolls › C-terminal carbohydrate-binding module 0.58 40.0 3.41e-01 72.9% 46.2%
3weeA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 42.0 3.18e-01 80.0% 71.0%
6z9cA01 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.57 39.0 3.30e-01 72.9% 45.9%
3pjyA00 2.60.120.1140 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF192 0.56 39.0 3.28e-01 74.3% 93.0%
1etb200 2.60.40.180 Mainly Beta › Sandwich › Immunoglobulin-like › Transthyretin/hydroxyisourate hydrolase domain 0.56 40.0 3.48e-01 77.1% 52.1%
2imlA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 41.0 3.57e-01 80.0% 59.3%
1xvsA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.56 39.0 3.27e-01 72.9% 44.7%
1a80A00 3.20.20.100 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain 0.56 44.0 3.06e-01 92.9% 85.9%
2ptfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 48.0 3.83e-01 98.6% 73.5%
2nytD00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.55 40.0 3.07e-01 78.6% 67.6%
3zgzD04 2.20.28.290 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.55 42.0 4.37e-01 85.7% 93.5%
4zfjD00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.55 41.0 2.90e-01 81.4% 38.3%
1ca1A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.54 38.0 3.28e-01 75.7% 48.3%
2r7eB03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 37.0 2.95e-01 72.9% 36.1%
4j2gA00 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.54 46.0 3.41e-01 100.0% 72.3%
2v1yA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 38.0 3.60e-01 78.6% 86.5%
2re7A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 44.0 3.70e-01 97.1% 75.0%
4jzjC02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 38.0 3.39e-01 77.1% 52.9%
2m2dA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 39.0 3.36e-01 80.0% 60.2%
1djsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 37.0 3.31e-01 77.1% 51.0%
2dk6A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.52 38.0 3.52e-01 78.6% 83.0%
2asfA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 44.0 3.73e-01 97.1% 76.0%
1grjA02 3.10.50.30 Alpha Beta › Roll › Chitinase A; domain 3 › Transcription elongation factor, GreA/GreB, C-terminal domain 0.52 36.0 3.48e-01 71.4% 83.1%
3wdhA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 35.0 3.22e-01 77.1% 51.0%
6l08A01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.52 35.0 2.76e-01 70.0% 53.0%
2jvuA00 2.60.40.2290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 35.0 3.18e-01 74.3% 51.0%
1rm6A05 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.52 43.0 3.35e-01 98.6% 78.6%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.52 36.0 2.87e-01 72.9% 41.6%
4avaA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 46.0 3.63e-01 100.0% 52.8%
1rfeA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 43.0 3.55e-01 97.1% 71.3%
2pn0A02 3.10.50.30 Alpha Beta › Roll › Chitinase A; domain 3 › Transcription elongation factor, GreA/GreB, C-terminal domain 0.51 36.0 3.45e-01 74.3% 82.9%
3in6A02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 42.0 3.68e-01 97.1% 83.8%
2htdB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 44.0 3.71e-01 98.6% 72.6%
1ffvB03 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.51 42.0 3.33e-01 98.6% 42.8%
5ko9A00 3.90.1680.10 Alpha Beta › Alpha-Beta Complex › hypothetical protein yedk fold › SOS response associated peptidase-like 0.51 36.0 2.49e-01 74.3% 61.3%
4zohA05 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.51 41.0 3.45e-01 100.0% 91.1%
5yjlD01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 43.0 3.49e-01 98.6% 65.5%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4939739 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.70 50.0 5.32e-01 74.3% 91.5%
3892842 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.70 50.0 5.13e-01 74.3% 80.0%
5012895 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.70 49.0 5.42e-01 74.3% 94.5%
5016230 375.1.1.64 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RUBY_RBDX 0.67 36.0 4.45e-01 75.7% 90.0%
5065436 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.67 46.0 4.82e-01 72.9% 81.2%
4951473 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.66 46.0 4.77e-01 72.9% 82.5%
4240799 299.1.1.0 ↗ a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain 0.64 53.0 4.19e-01 95.7% 81.3%
3210904 12.6.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related 0.63 49.0 4.03e-01 87.1% 97.0%
3273123 3578.1.1.0 ↗ beta sandwiches › Third domain in metalloprotease StcE › Third domain in metalloprotease StcE › Third domain in metalloprotease StcE 0.62 47.0 3.86e-01 80.0% 58.9%
4026734 2003.1.5.73 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_16 0.62 35.0 2.40e-01 77.1% 15.3%
3600531 4012.3.1.0 ↗ a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 0.62 43.0 4.84e-01 72.9% 100.0%
3640623 1.1.5.10 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Flavin_Reduct 0.61 48.0 4.23e-01 85.7% 62.9%
4610477 299.1.1.1 ↗ a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.61 52.0 3.75e-01 97.1% 59.1%
3391921 508.1.1.0 ↗ a+b three layers › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain 0.61 47.0 3.75e-01 84.3% 80.0%
3920306 10.32.1.2 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C 0.61 42.0 3.34e-01 72.9% 58.6%
3366242 2487.1.1.0 ↗ a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" 0.60 45.0 3.65e-01 81.4% 86.4%
4664972 299.1.1.0 ↗ a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain 0.60 52.0 4.10e-01 98.6% 74.0%
4996552 3115.1.1.1 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.60 48.0 4.51e-01 88.6% 75.3%
3216210 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.59 39.0 4.45e-01 72.9% 96.0%
3222254 304.9.1.40 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › BRAP2 0.59 44.0 3.71e-01 80.0% 69.7%
164160 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.57 41.0 3.68e-01 77.1% 75.5%
3389027 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 39.0 3.20e-01 72.9% 75.0%
3220637 304.112.1.0 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.57 45.0 3.81e-01 85.7% 89.6%
4951792 2498.1.1.9 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1 0.56 50.0 3.41e-01 100.0% 40.0%
3519916 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.56 42.0 3.82e-01 80.0% 64.2%
4162621 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 38.0 2.82e-01 72.9% 51.8%
4079831 284.1.1.4 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › GreA_GreB 0.55 40.0 3.72e-01 75.7% 85.9%
4032992 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.55 38.0 3.31e-01 72.9% 55.5%
5010420 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.55 40.0 3.49e-01 78.6% 98.1%
3590514 4056.1.1.0 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.55 37.0 4.11e-01 71.4% 100.0%
3228120 11.1.1.408 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF281 0.54 38.0 3.44e-01 75.7% 56.3%
3467990 109.4.1.1291 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, PPR_3, DYW_deaminase, E_motif 0.54 37.0 2.11e-01 70.0% 14.0%
3952849 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.54 42.0 2.89e-01 91.4% 37.4%
4084680 284.1.1.4 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › GreA_GreB 0.54 38.0 3.57e-01 74.3% 84.7%
4941845 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 36.0 4.02e-01 70.0% 96.2%
3881264 10.32.1.94 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CDC50 0.53 37.0 2.58e-01 72.9% 81.2%
3497883 10.32.1.94 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CDC50 0.53 39.0 3.06e-01 80.0% 70.6%
4239904 284.1.1.4 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › GreA_GreB 0.53 38.0 3.56e-01 75.7% 85.9%
3874262 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.53 38.0 3.31e-01 77.1% 80.9%
4039738 284.1.1.4 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › GreA_GreB 0.53 38.0 3.69e-01 77.1% 83.7%
4544250 284.1.1.4 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › GreA_GreB 0.52 36.0 3.44e-01 72.9% 84.5%
3320228 109.4.1.1285 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, DYW_deaminase, Eplus_motif, E_motif 0.52 35.0 2.06e-01 70.0% 15.1%
3398228 221.7.1.1 ↗ a+b two layers › beta-Grasp › E2-binding domain of E1 › E2-binding domain of E1 › E2_bind 0.52 35.0 3.18e-01 70.0% 95.0%
4409183 284.1.1.4 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › GreA_GreB 0.52 35.0 3.29e-01 70.0% 82.1%
1875315 231.1.1.2 ↗ a+b two layers › MocoBD/DmpA-related › MocoBD/DmpA-related › Molybdenum cofactor-binding domain › MoCoBD_2 0.52 42.0 2.76e-01 95.7% 65.7%
4317197 284.1.1.4 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › GreA_GreB 0.52 35.0 3.33e-01 71.4% 83.3%
4609844 11.1.1.99 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.51 37.0 3.37e-01 78.6% 69.0%
4066106 284.1.1.4 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › GreA_GreB 0.51 35.0 3.35e-01 70.0% 86.3%
3164768 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.51 35.0 2.93e-01 75.7% 42.1%
3234045 304.112.1.0 ↗ a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.50 40.0 3.49e-01 91.4% 95.0%
4259229 284.1.1.4 ↗ a+b two layers › FKBP-like › FKBP-like › FKBP-like › GreA_GreB 0.50 34.0 3.36e-01 70.0% 93.2%
3572785 12.5.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related 0.50 41.0 3.50e-01 97.1% 96.2%