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NC_047733.1__YP_009782926.1__HOQ82_gp012__00012

Bact-Vir

NC_047733.1__YP_009782926.1__HOQ82_gp012__00012

Identity

Accession:
NC_047733 ↗
Kingdom:
phage

Quality

58.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Neptunevirus› Synechococcus_phage_S-RIM8

TaxID: 756278

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 286-350
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 36.0 3.62e-01 96.9% 53.7%
1nr4C00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 34.0 3.42e-01 96.9% 53.0%
7qzqA01 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.60 50.0 3.28e-01 100.0% 43.2%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.59 37.0 3.36e-01 90.8% 44.6%
1w0pA02 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.58 49.0 3.13e-01 100.0% 47.2%
1icwB00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 34.0 3.42e-01 96.9% 56.1%
3rayA00 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.57 43.0 3.33e-01 84.6% 76.7%
3vz9B00 3.30.457.50 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › Chromosome segregation protein Spc25 0.56 37.0 3.25e-01 100.0% 43.7%
2wdoA00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.56 41.0 3.50e-01 83.1% 63.4%
2h8lA02 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 46.0 3.90e-01 100.0% 87.5%
4rnyA02 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 45.0 3.59e-01 100.0% 58.5%
3kstA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 43.0 2.97e-01 100.0% 55.7%
4hikA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 36.0 2.96e-01 72.3% 78.3%
3qz4A00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 44.0 2.94e-01 100.0% 93.1%
3gr0D01 3.30.70.1780 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 26.0 3.16e-01 87.7% 73.2%
4pz6A02 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.51 42.0 3.02e-01 100.0% 58.5%
2zadA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 46.0 3.80e-01 100.0% 85.1%
2bddA00 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.51 39.0 3.29e-01 89.2% 62.2%
4kcaA02 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.51 42.0 2.69e-01 98.5% 75.3%
1mbyA00 2.40.50.930 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 27.0 2.68e-01 86.2% 40.0%
5m1pB00 3.30.420.240 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.51 36.0 2.71e-01 78.5% 41.3%
2kafA00 3.40.30.150 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Coronavirus polyprotein cleavage domain 0.50 33.0 3.32e-01 100.0% 65.7%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3624915 3249.1.1.1 ↗ beta sandwiches › beta-sandwich domain in YqeH GTPase › beta-sandwich domain in YqeH GTPase › beta-sandwich domain in YqeH GTPase › YqeH-like_C 0.59 50.0 3.63e-01 93.8% 80.5%
4273211 108.1.1.115 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › PF30551 0.56 48.0 3.10e-01 100.0% 47.8%
3237267 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 38.0 3.33e-01 100.0% 44.8%
3949006 5.1.2.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_43 0.55 46.0 3.10e-01 100.0% 64.9%
4364684 218.1.1.5 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MenC_N 0.54 49.0 4.27e-01 100.0% 92.6%
3592482 375.3.1.0 ↗ few secondary structure elements › Rubredoxin-like › CSL zinc finger › CSL zinc finger 0.54 33.0 3.55e-01 100.0% 74.1%
5025053 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 36.0 2.86e-01 95.4% 33.3%
4145584 3016.1.1.11 ↗ a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › SelA 0.53 46.0 3.96e-01 100.0% 75.2%
1681454 304.166.1.9 ↗ a+b two layers › Alpha-beta plaits › Nup54 ferredoxin-like domain › Nup54 ferredoxin-like domain › PF29949 0.52 36.0 3.07e-01 73.8% 75.9%
3908469 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.51 31.0 2.70e-01 93.8% 35.5%
3827882 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 43.0 2.81e-01 100.0% 31.0%
D2 high residues 557-709
PDB
Domain cluster: rep: OR032571.1__WJZ48267.1__X__00077__D150-291
D3 medium residues 18-72
PDB
D4 medium residues 400-447_465-543
PDB
Domain cluster: rep: GU071095.1__ADO97357.1__SSM2_013__00013__D626-738