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NC_047733.1__YP_009783049.1__HOQ82_gp105__00135

Bact-Vir

NC_047733.1__YP_009783049.1__HOQ82_gp105__00135

Identity

Accession:
NC_047733 ↗
Kingdom:
phage

Quality

69.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Kyanoviridae› Neptunevirus› Synechococcus_phage_S-RIM8

TaxID: 756278

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 15-122
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5hvqC02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 43.0 4.54e-01 93.5% 90.8%
2fdrA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.54 30.0 3.62e-01 80.6% 85.1%
1bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 39.0 4.08e-01 96.3% 86.3%
1fnnB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 39.0 4.03e-01 92.6% 83.5%
3r2qA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.52 33.0 3.30e-01 87.0% 59.3%
4w8kA02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.52 37.0 3.15e-01 75.9% 82.8%
2ivxB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.51 37.0 3.45e-01 76.9% 82.1%
3onkA00 1.25.40.90 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.51 38.0 3.53e-01 78.7% 84.7%
3fxqB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 37.0 4.01e-01 94.4% 93.3%
1kgqA01 1.10.166.10 Mainly Alpha › Orthogonal Bundle › Tetrahydrodipicolinate-N-succinyltransferase; Chain A, domain 1 › Tetrahydrodipicolinate-N-succinyltransferase, N-terminal domain 0.50 29.0 3.40e-01 78.7% 84.3%
4n06A02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.50 38.0 2.95e-01 80.6% 88.6%
5b57B00 1.10.3470.10 Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC 0.50 42.0 3.07e-01 94.4% 78.0%
2esnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 37.0 4.03e-01 95.4% 94.4%
3r4iA02 6.10.140.960 Special › Helix non-globular › Helix Hairpins › 0.50 27.0 3.25e-01 83.3% 86.7%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3547354 109.3.1.8 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2 0.69 43.0 3.75e-01 91.7% 41.2%
3318132 5054.1.1.1 ↗ alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Lig_chan 0.60 31.0 2.78e-01 100.0% 32.5%
3840229 108.1.1.26 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5 0.58 38.0 4.29e-01 83.3% 88.7%
3452943 145.1.1.3 ↗ alpha arrays › F-box domain › F-box domain › F-box domain › F-box-like 0.58 30.0 3.18e-01 90.7% 53.7%
5002881 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 38.0 3.90e-01 88.9% 72.0%
3626374 150.5.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.55 29.0 3.12e-01 84.3% 56.7%
4995114 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 40.0 4.25e-01 98.1% 86.3%
4060154 4974.1.1.0 ↗ alpha bundles › CRISPR-Cas system first helical domain › CRISPR-Cas system first helical domain › CRISPR-Cas system RNase C2c2 first helical domain 0.55 40.0 3.37e-01 76.9% 66.3%
5001537 3281.1.1.1 ↗ alpha complex topology › Sodium/proton antiporter subunits-like › Sodium/proton antiporter subunits-like › NADH-quinone oxidoreductase subunit L (NuoL)-related › Proton_antipo_M 0.55 45.0 2.86e-01 88.9% 85.2%
3997738 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 35.0 3.83e-01 92.6% 82.4%
4575809 108.1.1.73 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_5+EF-hand_7 0.53 46.0 3.44e-01 98.1% 98.6%
3645601 101.1.2.386 ↗ alpha arrays › HTH › HTH › winged helix domain › WH_DRP 0.53 45.0 4.36e-01 95.4% 83.2%
5050809 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 34.0 2.45e-01 83.3% 19.5%
3984604 7558.1.1.10 ↗ a/b three-layered sandwiches › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › Glycerol-3-phosphate (1)-acyltransferase › GPAT_C 0.52 40.0 4.22e-01 90.7% 94.7%
3262813 3883.1.1.1 ↗ alpha bundles › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-OH_P_transf 0.51 40.0 3.17e-01 83.3% 68.4%
4046811 3239.1.1.1 ↗ alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.51 40.0 2.86e-01 82.4% 95.8%
4969033 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 43.0 3.67e-01 94.4% 75.0%
4996324 3239.1.1.1 ↗ alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 0.50 37.0 2.74e-01 79.6% 68.4%
D2 medium residues 137-178
PDB