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NC_047735.1__YP_009783409.1__QLX27_gp036__00036
Bact-VirNC_047735.1__YP_009783409.1__QLX27_gp036__00036
Identity
- Accession:
- NC_047735 ↗
- Kingdom:
- phage
Quality
85.2
mean pLDDT
Taxonomy
TaxID: 1126951
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-27_40-67
Domain cluster:
representative
CATH (36)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ezhA00 | 1.20.120.960 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Histidine kinase NarX, sensor domain | 0.74 | 61.0 | 4.77e-01 | 92.5% | 88.6% |
| 6f1eA01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.73 | 61.0 | 4.53e-01 | 94.3% | 38.8% |
| 1skvA00 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.70 | 55.0 | 5.21e-01 | 86.8% | 84.4% |
| 3ehfD01 | 1.20.5.1930 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.68 | 51.0 | 4.81e-01 | 81.1% | 77.8% |
| 1x4tA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.68 | 52.0 | 5.11e-01 | 84.9% | 86.2% |
| 4fvmA06 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.67 | 53.0 | 5.57e-01 | 84.9% | 95.8% |
| 1zu2A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.67 | 53.0 | 3.80e-01 | 88.7% | 30.4% |
| 1hr5A00 | 1.20.5.420 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C | 0.67 | 55.0 | 5.72e-01 | 90.6% | 97.9% |
| 1qu3A04 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.66 | 51.0 | 3.72e-01 | 84.9% | 84.0% |
| 2hepA00 | 1.10.287.540 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.66 | 48.0 | 5.22e-01 | 81.1% | 97.6% |
| 3fxdB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.66 | 53.0 | 5.15e-01 | 86.8% | 82.8% |
| 2jdiG01 | 1.10.287.80 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain | 0.66 | 50.0 | 4.83e-01 | 90.6% | 72.1% |
| 1lrzA03 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.65 | 52.0 | 4.96e-01 | 86.8% | 75.8% |
| 1wpbG01 | 1.10.287.680 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.65 | 47.0 | 4.75e-01 | 90.6% | 75.9% |
| 2d54A02 | 2.170.220.10 | Mainly Beta › Beta Complex › Methionyl-trna Synthetase; domain 2 › | 0.65 | 44.0 | 3.49e-01 | 79.2% | 34.2% |
| 2rp4A00 | 6.10.280.60 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Transcription factor p53, C-terminal domain | 0.65 | 50.0 | 4.55e-01 | 84.9% | 63.4% |
| 2x0cA01 | 1.20.1420.10 | Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain | 0.62 | 52.0 | 3.71e-01 | 100.0% | 77.5% |
| 1q0gA00 | 1.20.120.400 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nickel-containing superoxide dismutase | 0.62 | 52.0 | 4.09e-01 | 98.1% | 94.9% |
| 3b0pA02 | 1.20.120.1460 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.61 | 50.0 | 4.43e-01 | 88.7% | 93.3% |
| 1xfiA02 | 1.20.1700.10 | Mainly Alpha › Up-down Bundle › AF1104-like › AF1104-like | 0.61 | 45.0 | 3.74e-01 | 77.4% | 54.4% |
| 4ioeA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.61 | 44.0 | 3.74e-01 | 77.4% | 49.4% |
| 4e4eA01 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.61 | 50.0 | 4.55e-01 | 92.5% | 70.4% |
| 5b1aC01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.60 | 46.0 | 4.29e-01 | 84.9% | 70.6% |
| 2di0A01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.60 | 31.0 | 3.35e-01 | 84.9% | 58.7% |
| 2fzfA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.60 | 51.0 | 3.75e-01 | 96.2% | 73.3% |
| 1rqgA04 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.59 | 47.0 | 3.38e-01 | 86.8% | 77.5% |
| 2pusA04 | 6.10.140.300 | Special › Helix non-globular › Helix Hairpins › | 0.59 | 47.0 | 3.82e-01 | 90.6% | 48.1% |
| 2ckzA01 | 6.10.140.870 | Special › Helix non-globular › Helix Hairpins › | 0.58 | 46.0 | 4.75e-01 | 88.7% | 100.0% |
| 4b6xA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 46.0 | 4.31e-01 | 92.5% | 72.5% |
| 2e9xA01 | 1.20.58.1030 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.57 | 48.0 | 3.61e-01 | 92.5% | 68.8% |
| 1iyhB02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.56 | 45.0 | 3.57e-01 | 92.5% | 43.5% |
| 7kznP01 | 3.30.740.10 | Alpha Beta › 2-Layer Sandwich › Protein Inhibitor Of Neuronal Nitric Oxide Synthase › Protein Inhibitor Of Neuronal Nitric Oxide Synthase; | 0.56 | 46.0 | 3.83e-01 | 90.6% | 72.0% |
| 1qguB04 | 1.20.89.10 | Mainly Alpha › Up-down Bundle › Nitrogenase Molybdenum-iron Protein, subunit B; domain 4 › Nitrogenase Molybdenum-iron Protein, subunit B, domain 4 | 0.56 | 38.0 | 3.37e-01 | 73.6% | 53.0% |
| 2ebiA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.54 | 44.0 | 4.16e-01 | 94.3% | 90.9% |
| 7t7kA01 | 1.20.930.60 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › | 0.54 | 41.0 | 3.27e-01 | 86.8% | 41.5% |
| 3d36B02 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.52 | 40.0 | 3.94e-01 | 90.6% | 88.5% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3330916 | 3846.1.1.0 ↗ | alpha bundles › IcmR › IcmR › IcmR | 0.70 | 55.0 | 5.49e-01 | 84.9% | 85.5% |
| 4239634 | 616.1.1.1 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › Ribosomal_S15 | 0.67 | 57.0 | 5.22e-01 | 92.5% | 89.7% |
| 1176726 | 4325.1.1.2 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like › P53_C | 0.66 | 50.0 | 4.60e-01 | 83.0% | 63.4% |
| 4410658 | 4246.1.1.2 ↗ | a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 | 0.65 | 55.0 | 3.28e-01 | 96.2% | 44.6% |
| 5016327 | 605.1.1.2 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › H-kinase_dim | 0.64 | 51.0 | 4.67e-01 | 86.8% | 67.1% |
| 4031046 | 192.7.1.1 ↗ | alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › FemAB | 0.64 | 54.0 | 5.19e-01 | 92.5% | 83.3% |
| 3163939 | 192.6.1.0 ↗ | alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain | 0.64 | 50.0 | 5.16e-01 | 88.7% | 96.0% |
| 3588172 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.63 | 51.0 | 3.73e-01 | 92.5% | 33.3% |
| 3615716 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.62 | 50.0 | 3.86e-01 | 90.6% | 60.0% |
| 3509865 | 192.22.1.0 ↗ | alpha bundles › Long alpha-hairpin › Ral binding domain of RLIP76 › Ral binding domain of RLIP76 | 0.61 | 52.0 | 4.11e-01 | 96.2% | 50.9% |
| 4953267 | 632.11.1.19 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like › DUF2096_N | 0.61 | 49.0 | 4.09e-01 | 92.5% | 61.0% |
| 3916884 | 192.29.1.1 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB_dom | 0.61 | 47.0 | 4.48e-01 | 86.8% | 95.4% |
| 4949979 | 605.1.1.2 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › H-kinase_dim | 0.61 | 51.0 | 4.75e-01 | 92.5% | 75.4% |
| 3189035 | 192.8.1.0 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain | 0.58 | 47.0 | 4.24e-01 | 90.6% | 64.0% |
| 3849639 | 192.1.1.38 ↗ | alpha bundles › Long alpha-hairpin › GreA transcript cleavage protein, N-terminal domain › GreA transcript cleavage protein, N-terminal domain › DUF4527 | 0.58 | 45.0 | 4.42e-01 | 92.5% | 90.0% |
| 3839138 | 2004.1.1.36 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Dynamin_N | 0.58 | 43.0 | 2.68e-01 | 98.1% | 15.8% |
| 3237324 | 3710.1.1.1 ↗ | alpha bundles › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › Golgi to ER traffic protein 1 cytosolic domain › CHD5 | 0.54 | 42.0 | 4.10e-01 | 90.6% | 80.0% |
| 4933898 | 5041.1.1.1 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C | 0.54 | 40.0 | 3.51e-01 | 79.2% | 56.4% |
| 5073917 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 44.0 | 3.41e-01 | 100.0% | 53.6% |
D2
high
residues 74-140
Domain cluster:
rep: KX987999.1__AQN32648.1__BCP12_248__00225__D4-62