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NC_047736.1__YP_009783621.1__QLX26_gp025__00025

Bact-Vir

NC_047736.1__YP_009783621.1__QLX26_gp025__00025

Identity

Accession:
NC_047736 ↗
Kingdom:
phage

Quality

87.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-91
PDB
Domain cluster: representative
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.87 55.0 6.61e-01 100.0% 96.2%
3pe0A03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.85 53.0 5.85e-01 100.0% 78.1%
6c6sD02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.85 52.0 5.89e-01 100.0% 81.7%
1gcqB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.81 55.0 6.37e-01 100.0% 96.5%
4fssB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.81 57.0 6.46e-01 100.0% 95.1%
3mp6A05 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.80 47.0 5.25e-01 100.0% 74.6%
3nmzD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.80 54.0 5.31e-01 100.0% 65.5%
2kymA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.80 56.0 5.30e-01 100.0% 62.4%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.79 58.0 6.32e-01 100.0% 90.9%
2ekhA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.79 54.0 5.38e-01 100.0% 68.8%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.79 56.0 5.78e-01 100.0% 77.3%
1ov3A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.79 53.0 6.30e-01 100.0% 100.0%
2fpeA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.79 55.0 6.15e-01 100.0% 91.9%
2eczA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.79 55.0 5.83e-01 100.0% 81.4%
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.78 50.0 5.32e-01 100.0% 74.3%
6uy8A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.77 52.0 5.95e-01 100.0% 93.2%
6vlfA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.77 54.0 6.15e-01 100.0% 98.3%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.77 56.0 6.17e-01 100.0% 93.8%
2rqtA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.77 54.0 6.09e-01 100.0% 95.1%
2pqhB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.77 52.0 5.68e-01 100.0% 84.6%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 53.0 6.07e-01 100.0% 96.6%
1s1nA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 52.0 5.90e-01 100.0% 93.3%
5zwzA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 52.0 5.56e-01 97.5% 80.0%
5o99A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 51.0 5.73e-01 100.0% 91.7%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 55.0 5.72e-01 100.0% 82.4%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 51.0 5.43e-01 100.0% 80.9%
2epdA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 50.0 5.16e-01 100.0% 72.4%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 52.0 5.99e-01 100.0% 100.0%
2ke9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 54.0 5.85e-01 100.0% 92.5%
1ng2A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 38.0 5.03e-01 82.3% 95.5%
1v1cA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 52.0 5.60e-01 100.0% 92.6%
6bioA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 48.0 5.54e-01 94.9% 100.0%
3h6zA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 46.0 4.10e-01 100.0% 50.9%
4wsiA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 47.0 5.08e-01 93.7% 95.5%
1t0hA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 45.0 4.20e-01 94.9% 65.6%
2dk3A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.56 41.0 4.02e-01 100.0% 72.1%
2iw3A05 2.40.50.990 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 42.0 3.81e-01 96.2% 63.3%
1whlA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.52 47.0 4.42e-01 100.0% 81.1%
2hq7B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 45.0 3.67e-01 94.9% 76.8%
3hl8A02 3.30.1520.20 Alpha Beta › 2-Layer Sandwich › PX Domain › Exonuclease ExoI, domain 2 0.51 46.0 3.86e-01 100.0% 59.0%
ECOD (84)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3902139 4.1.1.99 beta barrels › SH3 › SH3 › SH3 › SH3_10 0.88 58.0 6.11e-01 100.0% 75.7%
3484478 4.1.1.99 beta barrels › SH3 › SH3 › SH3 › SH3_10 0.87 55.0 6.31e-01 98.7% 85.0%
142250 4.1.1.99 beta barrels › SH3 › SH3 › SH3 › SH3_10 0.85 53.0 5.81e-01 100.0% 76.9%
3233461 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.84 59.0 6.68e-01 100.0% 95.0%
3563539 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.82 56.0 5.92e-01 100.0% 78.6%
3893368 4.1.1.99 beta barrels › SH3 › SH3 › SH3 › SH3_10 0.82 54.0 5.89e-01 100.0% 81.5%
3481344 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.82 56.0 6.20e-01 98.7% 86.2%
3572393 4.1.1.99 beta barrels › SH3 › SH3 › SH3 › SH3_10 0.82 54.0 5.70e-01 100.0% 75.7%
4483819 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.81 55.0 5.86e-01 100.0% 78.6%
3569639 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.81 55.0 5.51e-01 100.0% 68.8%
3702915 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.81 56.0 6.33e-01 100.0% 93.3%
4171510 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.81 57.0 5.67e-01 100.0% 71.2%
3625911 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.81 56.0 6.18e-01 100.0% 87.7%
3621642 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.80 55.0 5.54e-01 100.0% 70.0%
3483363 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 52.0 5.65e-01 100.0% 80.0%
3526953 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.80 57.0 6.31e-01 100.0% 92.1%
3479350 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.80 55.0 5.37e-01 100.0% 65.9%
3918767 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.80 56.0 5.45e-01 100.0% 67.1%
3924338 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.80 55.0 5.84e-01 100.0% 80.0%
3573262 4.1.1.91 beta barrels › SH3 › SH3 › SH3 › hSH3 0.80 55.0 5.22e-01 100.0% 62.2%
3487936 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 55.0 5.81e-01 100.0% 80.0%
3391702 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.80 54.0 5.41e-01 100.0% 68.8%
3631298 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.80 58.0 5.99e-01 100.0% 80.0%
1393628 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.80 56.0 4.81e-01 100.0% 48.3%
3535424 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.79 55.0 5.88e-01 100.0% 81.4%
3210707 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.79 58.0 6.59e-01 100.0% 100.0%
3619598 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.79 54.0 5.24e-01 97.5% 64.7%
3891252 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.79 56.0 6.37e-01 100.0% 96.7%
3873942 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 55.0 6.08e-01 98.7% 87.7%
3214234 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 55.0 6.16e-01 100.0% 95.0%
3918340 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.79 56.0 5.92e-01 100.0% 82.9%
157526 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.79 56.0 6.28e-01 98.7% 93.7%
3898370 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.78 55.0 6.29e-01 98.7% 98.3%
3512419 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.78 56.0 5.49e-01 100.0% 69.4%
3787441 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.78 57.0 5.43e-01 100.0% 66.7%
3936225 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 55.0 5.81e-01 100.0% 82.9%
3415045 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.77 53.0 5.63e-01 100.0% 80.0%
3482680 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 56.0 6.17e-01 100.0% 92.3%
4218488 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.77 56.0 5.63e-01 100.0% 75.0%
3623785 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.77 56.0 5.77e-01 100.0% 80.0%
3879132 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.77 58.0 5.95e-01 100.0% 82.7%
3566631 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.77 56.0 5.60e-01 100.0% 75.0%
3581631 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.76 56.0 6.10e-01 100.0% 92.3%
3999508 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 56.0 5.95e-01 100.0% 85.7%
3561094 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.76 57.0 5.90e-01 100.0% 82.7%
3999846 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.76 56.0 5.73e-01 100.0% 80.0%
3743973 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.76 54.0 5.46e-01 100.0% 73.8%
4028731 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 53.0 5.76e-01 100.0% 87.7%
3241067 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 48.0 4.28e-01 100.0% 47.3%
3227565 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.75 52.0 5.89e-01 96.2% 95.0%
3171604 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.74 58.0 6.02e-01 100.0% 88.0%
4483091 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.73 59.0 5.28e-01 100.0% 63.8%
3743464 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.73 55.0 5.66e-01 100.0% 82.7%
3203654 601.16.1.12 alpha bundles › Four-helical up-and-down bundle › FAT domain of focal adhesion kinase › FAT domain of focal adhesion kinase › SH3_1 0.72 54.0 3.94e-01 100.0% 31.0%
3607307 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.72 54.0 5.72e-01 100.0% 88.6%
4038705 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.72 55.0 6.01e-01 100.0% 96.9%
3710561 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.72 53.0 5.83e-01 100.0% 95.4%
3290564 4.1.1.292 beta barrels › SH3 › SH3 › SH3 › SH3_Rv2311 0.70 56.0 5.33e-01 100.0% 73.3%
3475429 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 54.0 5.74e-01 98.7% 92.9%
157323 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 52.0 5.60e-01 100.0% 92.6%
3786978 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 55.0 5.84e-01 100.0% 97.1%
4542692 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 51.0 4.97e-01 100.0% 72.9%
4669027 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.66 47.0 3.33e-01 100.0% 24.6%
3737805 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.66 57.0 5.84e-01 100.0% 96.0%
3624228 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.66 56.0 5.74e-01 100.0% 96.0%
3821922 4.1.1.299 beta barrels › SH3 › SH3 › SH3 › KOW, KOW1_SPT5 0.65 61.0 5.12e-01 100.0% 90.4%
3707929 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 52.0 4.03e-01 100.0% 43.1%
4950222 4.1.1.30 beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.62 57.0 5.08e-01 100.0% 74.5%
3170649 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.62 53.0 5.16e-01 98.7% 84.7%
4001976 4.1.1.77 beta barrels › SH3 › SH3 › SH3 › VGCC_beta4Aa_N 0.61 46.0 4.19e-01 94.9% 60.0%
3940829 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 46.0 4.11e-01 94.9% 57.3%
3498585 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.60 53.0 4.64e-01 98.7% 90.8%
4950603 4.1.1.30 beta barrels › SH3 › SH3 › SH3 › PemK_toxin 0.59 54.0 4.71e-01 100.0% 72.2%
3498157 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.56 51.0 4.60e-01 100.0% 82.9%
515 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.55 50.0 4.75e-01 100.0% 98.9%
3434094 4.1.1.158 beta barrels › SH3 › SH3 › SH3 › DUF3444 0.55 48.0 4.52e-01 100.0% 77.9%
3214006 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.55 50.0 4.19e-01 100.0% 74.6%
3232165 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.55 50.0 4.76e-01 98.7% 98.9%
5024219 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.54 46.0 2.89e-01 96.2% 43.7%
3900192 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 46.0 3.55e-01 100.0% 49.2%
4029344 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 48.0 3.90e-01 100.0% 62.1%
3694832 219.1.1.93 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF6540 0.52 40.0 3.51e-01 100.0% 55.0%
4323235 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.52 46.0 4.16e-01 100.0% 71.8%
3719639 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 47.0 4.01e-01 100.0% 69.6%
D2 high residues 99-206
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2b4vA02 3.30.460.50 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.55 33.0 3.22e-01 89.8% 53.8%
2jsxA01 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.54 32.0 3.71e-01 100.0% 87.3%
3s6pG00 6.10.140.1660 Special › Helix non-globular › Helix Hairpins › 0.53 28.0 3.33e-01 75.0% 73.6%
2oarB00 1.10.1200.120 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Large-conductance mechanosensitive channel, MscL; domain 1 0.52 35.0 3.40e-01 98.1% 59.2%
5zyrA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 41.0 3.66e-01 83.3% 88.7%
1xmbA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 36.0 3.73e-01 100.0% 77.2%
1bm8A00 3.10.260.10 Alpha Beta › Roll › Mlu1-box Binding Protein; DNA-binding Domain › Transcription regulator HTH, APSES-type DNA-binding domain 0.51 33.0 3.44e-01 99.1% 71.7%
3cjnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 39.0 3.53e-01 81.5% 88.4%
6ko5A02 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.50 45.0 3.32e-01 100.0% 66.1%
2nyxB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 38.0 3.52e-01 81.5% 83.8%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3994523 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.69 41.0 5.01e-01 91.7% 91.4%
4950395 1036.1.1.1 a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › NMD3 0.58 28.0 2.85e-01 86.1% 43.6%
3878040 3937.1.1.2 alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Innexin 0.55 41.0 2.87e-01 77.8% 68.8%
2507077 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.54 35.0 3.05e-01 90.7% 40.8%
3597631 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 47.0 3.60e-01 98.1% 50.6%
4033119 101.1.9.63 alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N 0.52 36.0 3.74e-01 89.8% 76.0%
5051534 101.1.2.48 alpha arrays › HTH › HTH › winged helix domain › PadR 0.50 35.0 2.95e-01 89.8% 42.2%
4029192 101.1.2.236 alpha arrays › HTH › HTH › winged helix domain › POLR3C_WHD 0.50 42.0 2.94e-01 92.6% 74.7%
4638765 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.50 37.0 3.40e-01 76.9% 95.7%
4030310 3871.1.1.0 alpha duplicates or obligate multimers › PHIST › PHIST › PHIST 0.50 41.0 2.78e-01 89.8% 27.9%