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NC_047736.1__YP_009783789.1__QLX26_gp193__00193

Bact-Vir

NC_047736.1__YP_009783789.1__QLX26_gp193__00193

Identity

Accession:
NC_047736 ↗
Kingdom:
phage

Quality

77.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-84
PDB
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.84 60.0 6.71e-01 100.0% 96.2%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 54.0 5.78e-01 100.0% 83.1%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 51.0 5.87e-01 100.0% 98.0%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.75 52.0 5.42e-01 100.0% 80.6%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 49.0 4.66e-01 100.0% 65.1%
1v29B02 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.64 57.0 5.13e-01 100.0% 84.5%
2f5kA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 43.0 4.77e-01 100.0% 100.0%
1kiaA01 3.30.46.10 Alpha Beta › 2-Layer Sandwich › Glycine N-methyltransferase; chain A, domain 1 › Glycine N-methyltransferase, chain A, domain 1 0.62 45.0 4.23e-01 76.8% 92.8%
2ikkA00 3.40.1410.10 Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like 0.60 40.0 3.22e-01 71.0% 41.8%
3qdfA01 2.30.30.370 Mainly Beta › Roll › SH3 type barrels. › FAH 0.60 45.0 4.81e-01 100.0% 96.6%
4rljB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.59 48.0 3.74e-01 88.4% 88.4%
2le1A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.59 39.0 3.04e-01 85.5% 31.1%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 44.0 4.35e-01 100.0% 77.6%
4a4kA02 2.30.30.1160 Mainly Beta › Roll › SH3 type barrels. › 0.58 52.0 4.16e-01 100.0% 60.9%
6j5cA02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.58 41.0 3.93e-01 100.0% 63.9%
2qf4A02 2.40.10.350 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 2 0.56 48.0 4.34e-01 92.8% 89.0%
3agjF01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.56 48.0 4.01e-01 100.0% 61.4%
3lhoA01 3.10.180.50 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 0.56 38.0 2.66e-01 85.5% 20.5%
2o1qA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 47.0 3.93e-01 98.6% 100.0%
4ifsA01 2.30.29.150 Mainly Beta › Roll › PH-domain like › 0.55 46.0 3.77e-01 94.2% 87.9%
3n7cA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 45.0 3.96e-01 94.2% 92.6%
2c4iA01 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.54 47.0 4.00e-01 100.0% 94.1%
1z6bA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 43.0 3.50e-01 88.4% 78.2%
3nixB00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 46.0 2.87e-01 95.7% 39.3%
2x45A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 46.0 3.71e-01 100.0% 61.1%
2gcjA01 2.30.29.150 Mainly Beta › Roll › PH-domain like › 0.53 44.0 3.65e-01 95.7% 87.3%
2cm4A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 46.0 3.70e-01 100.0% 65.5%
1fm4A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 44.0 3.44e-01 94.2% 60.4%
2flhB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 43.0 3.36e-01 89.9% 59.5%
3bcwA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 40.0 3.60e-01 85.5% 98.1%
2cg8C01 3.30.1130.10 Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.53 40.0 3.46e-01 85.5% 93.3%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.53 42.0 3.38e-01 92.8% 81.2%
2i9yA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 45.0 3.46e-01 95.7% 61.8%
2fb7A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.52 44.0 4.25e-01 100.0% 85.0%
1dhnA00 3.30.1130.10 Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.52 39.0 3.38e-01 85.5% 91.7%
3ddvB01 3.40.1410.10 Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like 0.52 41.0 3.38e-01 89.9% 75.2%
3f6gA02 3.30.160.340 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 36.0 3.73e-01 78.3% 79.4%
1ia9A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 44.0 3.58e-01 100.0% 91.7%
5u8rA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 36.0 3.18e-01 75.4% 97.2%
2vneA01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 42.0 3.28e-01 94.2% 58.3%
5bv3D01 3.30.200.40 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Scavenger mRNA decapping enzyme, N-terminal domain 0.51 43.0 3.77e-01 100.0% 87.5%
1yliB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.51 40.0 3.28e-01 92.8% 73.6%
6ruiB04 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.51 37.0 2.85e-01 81.2% 98.9%
3juuA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 41.0 2.84e-01 94.2% 98.1%
1g1bA00 3.40.1410.10 Alpha Beta › 3-Layer(aba) Sandwich › Chorismate lyase › Chorismate lyase-like 0.50 40.0 3.19e-01 94.2% 90.2%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3926118 4.1.1.223 beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.86 63.0 6.74e-01 98.6% 88.3%
3928430 4.1.1.223 beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.85 63.0 6.35e-01 100.0% 77.1%
4168737 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 60.0 5.85e-01 100.0% 75.7%
3703970 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 67.0 5.78e-01 100.0% 63.8%
3932484 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 58.0 5.97e-01 100.0% 89.1%
3591607 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.74 65.0 4.32e-01 100.0% 26.5%
4027263 4.1.1.104 beta barrels › SH3 › SH3 › SH3 › KN17_SH3 0.73 53.0 4.41e-01 100.0% 44.2%
3786412 4.1.1.344 beta barrels › SH3 › SH3 › SH3 › PF31193 0.73 60.0 5.69e-01 100.0% 76.2%
3615365 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.72 66.0 4.51e-01 100.0% 30.4%
3443078 4.1.1.330 beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O, SH3-C_UBE2O 0.69 55.0 4.06e-01 100.0% 33.7%
3723175 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.69 57.0 5.20e-01 100.0% 68.9%
3761319 4.1.1.253 beta barrels › SH3 › SH3 › SH3 › DUF4537 0.69 55.0 5.65e-01 100.0% 92.3%
3592832 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 58.0 4.53e-01 98.6% 60.6%
3389662 4.1.1.219 beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.67 52.0 5.03e-01 100.0% 73.8%
3397845 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 55.0 4.75e-01 100.0% 58.1%
3469267 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 54.0 4.85e-01 88.4% 83.2%
3257650 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 55.0 5.15e-01 100.0% 75.3%
4002681 377.1.2.0 few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › PARP-type zinc finger 0.65 49.0 4.52e-01 100.0% 62.2%
3796536 708.1.1.16 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.65 48.0 4.63e-01 91.3% 68.8%
3713382 220.1.1.19 beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.64 53.0 4.67e-01 92.8% 75.2%
3354076 4.1.1.330 beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O, SH3-C_UBE2O 0.63 54.0 4.38e-01 100.0% 50.0%
3675653 4.1.1.239 beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O 0.63 52.0 5.11e-01 100.0% 84.0%
3939941 4.1.1.235 beta barrels › SH3 › SH3 › SH3 › KOW1_SPT5 0.63 56.0 4.56e-01 100.0% 87.7%
3501337 4.1.1.169 beta barrels › SH3 › SH3 › SH3 › DUF4819 0.62 55.0 5.23e-01 100.0% 83.7%
3476336 4.1.1.239 beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O 0.62 51.0 5.08e-01 100.0% 88.6%
3833012 4.1.1.239 beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O 0.61 49.0 4.68e-01 100.0% 75.3%
3698096 219.1.1.115 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › AIM3_BBC1_C 0.60 52.0 3.93e-01 100.0% 43.9%
3684460 4.1.1.219 beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.60 54.0 4.88e-01 100.0% 86.3%
4017999 2003.1.2.29 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › NAD_binding_8 0.59 50.0 3.04e-01 95.7% 61.0%
3436414 1.1.17.3 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.59 53.0 3.74e-01 100.0% 55.2%
3315510 4.1.1.246 beta barrels › SH3 › SH3 › SH3 › Tudor_Coilin 0.59 53.0 4.55e-01 100.0% 76.4%
3678872 4.1.1.239 beta barrels › SH3 › SH3 › SH3 › SH3-B_UBE2O 0.59 51.0 4.96e-01 100.0% 88.0%
3361070 2003.1.2.102 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3, Pyr_redox_2 0.59 49.0 3.09e-01 95.7% 37.4%
3363751 4.1.1.246 beta barrels › SH3 › SH3 › SH3 › Tudor_Coilin 0.59 53.0 4.61e-01 100.0% 80.0%
3737837 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 46.0 4.75e-01 100.0% 95.4%
3721787 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.58 50.0 4.69e-01 100.0% 76.5%
3931715 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.58 51.0 4.54e-01 98.6% 96.0%
3829754 4.1.1.158 beta barrels › SH3 › SH3 › SH3 › DUF3444 0.58 52.0 4.67e-01 100.0% 72.6%
3450141 283.2.1.8 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › PF29994 0.58 47.0 4.18e-01 89.9% 67.0%
4622312 2003.1.2.5 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like 0.58 49.0 3.01e-01 97.1% 37.1%
3183677 523.1.1.3 a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › PF29994 0.58 46.0 4.02e-01 89.9% 58.2%
3854465 283.2.1.8 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › PF29994 0.57 46.0 3.92e-01 89.9% 54.2%
4951886 3174.4.1.0 beta barrels › Ribosomal protein L14-like › Hypothetical protein NegoA.19184.a N-terminal domain › Hypothetical protein NegoA.19184.a N-terminal domain 0.57 50.0 4.58e-01 97.1% 73.3%
3199415 378.1.1.9 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_2 0.57 47.0 3.28e-01 91.3% 63.4%
3935018 708.1.1.16 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.56 46.0 4.40e-01 91.3% 77.5%
5047600 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.56 45.0 3.61e-01 87.0% 88.9%
5080017 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.56 48.0 3.77e-01 100.0% 53.8%
4999914 4.23.1.2 beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.56 48.0 4.01e-01 100.0% 63.1%
4523548 4.8.1.35 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF1292 0.56 45.0 4.26e-01 91.3% 75.3%
3629844 708.1.1.16 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.56 45.0 4.55e-01 91.3% 88.6%
3991018 708.1.1.16 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.56 46.0 4.41e-01 91.3% 78.8%
3837731 5084.1.1.3 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › MSP 0.55 45.0 3.76e-01 88.4% 84.7%
4001355 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 41.0 3.66e-01 79.7% 94.0%
4932882 4.23.1.2 beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.55 47.0 3.90e-01 100.0% 57.0%
4536848 4.23.1.2 beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.55 47.0 3.92e-01 100.0% 63.8%
3695678 3924.1.1.0 alpha complex topology › Sterol uptake control protein 2 › Sterol uptake control protein 2 › Sterol uptake control protein 2 0.55 46.0 2.88e-01 97.1% 26.8%
3935302 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.55 41.0 3.15e-01 81.2% 74.5%
3580039 708.1.1.16 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.55 49.0 3.74e-01 100.0% 48.1%
4537528 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.54 43.0 4.36e-01 100.0% 91.4%
3665093 109.4.1.338 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RIC1 0.54 46.0 2.85e-01 92.8% 21.3%
3618804 708.1.1.16 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.54 44.0 4.18e-01 91.3% 74.1%
3189222 2003.1.2.16 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.54 43.0 2.69e-01 94.2% 37.5%
3959772 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.53 40.0 3.07e-01 81.2% 72.7%
3915698 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 37.0 3.47e-01 73.9% 90.6%
3691461 868.1.1.3 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › Med20 0.52 45.0 3.11e-01 100.0% 32.7%
3375162 220.1.1.59 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH1_SSRP1-like 0.52 41.0 3.44e-01 92.8% 77.0%
3580938 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 41.0 3.37e-01 92.8% 72.4%
5052639 3435.1.1.0 a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC 0.51 45.0 3.17e-01 100.0% 32.6%
3555522 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.51 41.0 3.33e-01 92.8% 70.7%
3205589 5.1.11.10 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › Rrn6_beta-prop 0.51 42.0 2.70e-01 100.0% 37.8%