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NC_047739.1__YP_009783964.1__HOQ89_gp006__00006

Bact-Vir

NC_047739.1__YP_009783964.1__HOQ89_gp006__00006

Identity

Accession:
NC_047739 ↗
Kingdom:
phage

Quality

84.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Douglaswolinvirus› Lactobacillus_phage_ATCC_8014-B2

TaxID: 1225795

Cluster

View cluster (12 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-65
PDB
Domain cluster: rep: MK504444.1__QBJ03553.1__UCC3521_0015__00015__D2-74
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1pzxA03 3.30.1180.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Protein Tm841; Chain: A;domain 3 › 0.65 46.0 3.69e-01 76.8% 55.7%
1w1hD00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 52.0 3.99e-01 91.1% 51.1%
5d5gA00 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.63 49.0 4.03e-01 87.5% 83.5%
8adbA01 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.63 53.0 3.72e-01 100.0% 43.5%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 54.0 5.20e-01 100.0% 93.7%
4le7A02 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.61 46.0 4.16e-01 85.7% 80.5%
3u50C02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.60 37.0 4.27e-01 92.9% 100.0%
3mezD00 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.59 49.0 4.04e-01 98.2% 74.1%
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.59 50.0 3.95e-01 100.0% 46.4%
3cihA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.59 51.0 4.01e-01 100.0% 59.3%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.58 42.0 4.25e-01 94.6% 78.9%
4tkcA00 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.58 47.0 3.86e-01 98.2% 69.5%
4okcA01 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.57 45.0 4.27e-01 89.3% 85.5%
4gc1A01 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.57 45.0 3.72e-01 87.5% 76.0%
1o67C00 2.40.33.20 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.52 46.0 3.09e-01 100.0% 33.8%
1t7vA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.51 37.0 2.71e-01 82.1% 36.0%
4g6iC02 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.51 44.0 3.71e-01 100.0% 58.5%
4msxA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.50 38.0 3.34e-01 85.7% 84.9%
1kacA00 2.60.90.10 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › Adenovirus pIV-related, attachment domain 0.50 36.0 2.60e-01 78.6% 57.3%
ECOD (17)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3341478 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.73 38.0 4.47e-01 71.4% 72.5%
3663352 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 46.0 4.57e-01 78.6% 68.3%
None — 0.65 49.0 3.05e-01 82.1% 31.2%
3466927 4.2.1.4 ↗ beta barrels › SH3 › SAND › SAND › TDBD 0.63 55.0 4.72e-01 98.2% 82.2%
3172580 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 49.0 3.01e-01 89.3% 75.7%
3271862 5.1.4.156 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Ge1_WD40 0.62 50.0 3.08e-01 92.9% 42.4%
3827973 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.60 47.0 2.97e-01 89.3% 85.9%
3817530 5.1.3.65 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.60 47.0 3.12e-01 89.3% 46.7%
3936802 10.1.1.90 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › PF29322 0.60 49.0 3.79e-01 100.0% 74.0%
4987925 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 43.0 3.91e-01 80.4% 96.2%
4223216 214.1.1.7 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2_1 0.58 49.0 3.83e-01 98.2% 78.5%
3998218 376.1.1.5 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP 0.56 40.0 3.03e-01 78.6% 83.1%
3548728 376.1.1.5 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP 0.54 41.0 3.59e-01 83.9% 84.4%
4889754 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.53 37.0 3.70e-01 76.8% 75.0%
5009920 2004.1.1.308 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.52 43.0 2.76e-01 96.4% 26.0%
3481222 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.51 39.0 3.45e-01 87.5% 84.4%
3463741 7516.1.1.16 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_transf_43 0.50 42.0 2.77e-01 100.0% 60.0%