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NC_047739.1__YP_009783965.1__HOQ89_gp007__00007

Bact-Vir

NC_047739.1__YP_009783965.1__HOQ89_gp007__00007

Identity

Accession:
NC_047739 ↗
Kingdom:
phage

Quality

62.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Douglaswolinvirus› Lactobacillus_phage_ATCC_8014-B2

TaxID: 1225795

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 20-81
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2hc5A01 3.30.160.170 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like 0.72 54.0 4.65e-01 80.6% 55.1%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.67 58.0 4.90e-01 98.4% 87.5%
3s27B01 3.10.450.330 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 45.0 3.59e-01 82.3% 34.6%
2kieA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.65 56.0 4.55e-01 100.0% 78.2%
1ggpA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.65 47.0 3.54e-01 77.4% 37.6%
1qw2A00 3.30.1980.10 Alpha Beta › 2-Layer Sandwich › Hypothetical protein Ta1206 fold › Hypothetical protein YunC 0.64 46.0 3.96e-01 77.4% 61.8%
5fgoA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.64 46.0 4.64e-01 77.4% 82.3%
3cm1A00 2.30.31.20 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Sporulation-specific cell division protein SsgB 0.63 51.0 4.07e-01 93.5% 75.7%
3pubA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.63 55.0 4.07e-01 98.4% 93.8%
1y5oA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 50.0 4.22e-01 91.9% 88.7%
3vl9B00 2.60.120.180 Mainly Beta › Sandwich › Jelly Rolls › Glycoside hydrolase family 11/12, catalytic domain 0.63 48.0 3.22e-01 87.1% 22.6%
4wsfA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 54.0 4.49e-01 98.4% 80.2%
7b9cA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 53.0 3.31e-01 98.4% 27.4%
3wyfE00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 52.0 4.10e-01 98.4% 62.7%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.62 42.0 4.06e-01 71.0% 77.5%
1krlA00 6.20.50.130 Special › Other non-globular › N-terminal domain of TfIIb › 0.61 38.0 4.35e-01 75.8% 90.9%
4qdgA02 2.60.40.2090 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 44.0 3.50e-01 77.4% 91.1%
1s4uX00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 54.0 3.33e-01 100.0% 31.5%
2lqkA00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.60 43.0 4.19e-01 79.0% 80.0%
2m2lA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 47.0 4.60e-01 91.9% 82.1%
1l0qA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 53.0 3.39e-01 100.0% 29.9%
2fblB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.59 42.0 3.21e-01 75.8% 81.8%
3htvA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.58 47.0 3.97e-01 91.9% 93.7%
3u4yA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 50.0 3.20e-01 98.4% 58.6%
4lqzA00 2.40.128.570 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4909 0.58 44.0 3.54e-01 85.5% 82.4%
1ei5A01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.58 41.0 2.64e-01 75.8% 15.3%
5z5dA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 50.0 3.50e-01 100.0% 56.3%
3oggA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.56 46.0 3.47e-01 98.4% 88.8%
2nugB02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 39.0 3.78e-01 74.2% 78.9%
2oa9B02 3.30.70.3570 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › MvaI/BcnI restriction endonuclease, recognition domain 0.56 43.0 3.55e-01 90.3% 69.3%
7r8iA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.55 43.0 3.03e-01 88.7% 39.2%
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 42.0 3.66e-01 88.7% 82.9%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.53 42.0 4.03e-01 100.0% 77.3%
1oxxK02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 34.0 3.68e-01 95.2% 88.9%
6jptA00 3.30.230.90 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.53 45.0 3.68e-01 98.4% 90.1%
1h54A03 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.53 32.0 3.07e-01 74.2% 50.0%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 41.0 3.87e-01 83.9% 77.6%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.53 45.0 2.86e-01 100.0% 22.9%
1d5aA01 3.30.342.10 Alpha Beta › 2-Layer Sandwich › DNA Polymerase; Chain A, domain 1 › DNA Polymerase, chain B, domain 1 0.53 42.0 3.19e-01 88.7% 80.8%
2rcqA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 45.0 3.54e-01 100.0% 77.3%
6j9eJ00 3.30.160.560 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 43.0 4.23e-01 100.0% 87.9%
5wceA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.51 42.0 3.41e-01 93.5% 69.8%
3s5wA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 42.0 2.62e-01 96.8% 90.0%
4myjA05 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 36.0 3.34e-01 79.0% 86.4%
4tm3A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 37.0 2.32e-01 82.3% 42.3%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5832 4292.1.1.1 ↗ a+b two layers › FlaG-like › FlaG-related › FlaG-related › FlaG 0.72 54.0 4.49e-01 80.6% 49.5%
5019887 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.71 49.0 4.65e-01 91.9% 61.6%
3999576 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.70 51.0 3.92e-01 77.4% 40.0%
5022885 5.1.4.43 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP_3 0.70 61.0 3.56e-01 100.0% 12.7%
3578398 4099.1.1.29 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › PF29306 0.70 51.0 3.72e-01 77.4% 34.1%
3461718 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.68 49.0 3.31e-01 100.0% 20.9%
4033429 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.68 51.0 4.70e-01 95.2% 62.5%
None — 0.67 49.0 3.33e-01 77.4% 86.5%
3619980 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.67 48.0 4.05e-01 77.4% 49.1%
3673032 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 55.0 5.34e-01 93.5% 97.1%
3579362 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.66 48.0 3.98e-01 77.4% 46.4%
3263889 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.66 55.0 3.25e-01 91.9% 36.5%
3750640 220.1.1.38 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N 0.66 57.0 4.77e-01 98.4% 82.7%
3737835 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.65 46.0 3.99e-01 75.8% 50.0%
3483808 295.1.1.3 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.65 46.0 4.50e-01 77.4% 72.9%
3228051 295.1.1.3 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.64 47.0 4.69e-01 80.6% 81.5%
3672898 295.1.1.3 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.64 47.0 3.81e-01 80.6% 40.8%
3465186 5.1.8.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › putative conserved lipoprotein NT01CX_1156 0.64 56.0 4.40e-01 98.4% 86.9%
3356481 386.1.1.117 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7028 0.63 43.0 3.91e-01 100.0% 53.0%
3786329 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.63 39.0 4.09e-01 74.2% 69.1%
3550970 719.1.1.5 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › PF27933 0.63 47.0 3.95e-01 80.6% 83.6%
4544568 719.1.1.5 ↗ beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › PF27933 0.63 47.0 3.92e-01 80.6% 82.7%
3589823 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.63 46.0 4.60e-01 80.6% 83.1%
3827251 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.62 50.0 3.19e-01 90.3% 34.7%
3592221 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 50.0 4.18e-01 93.5% 77.1%
3427749 295.1.1.3 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.62 45.0 4.53e-01 80.6% 78.5%
3649955 6.1.1.12 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Agglutinin 0.62 53.0 3.99e-01 98.4% 85.0%
4966836 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 46.0 4.84e-01 100.0% 94.5%
3905746 295.1.1.3 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.61 44.0 4.28e-01 77.4% 72.9%
5047148 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.61 46.0 2.97e-01 83.9% 18.5%
3920675 295.1.1.3 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.61 44.0 4.21e-01 79.0% 68.0%
3903515 511.1.1.0 ↗ beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain 0.61 42.0 3.16e-01 72.6% 63.9%
3510695 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.61 42.0 3.96e-01 74.2% 67.5%
4827332 109.4.1.41 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Lipoprotein_11 0.60 50.0 3.87e-01 95.2% 93.2%
3394516 241.15.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N 0.60 42.0 3.30e-01 75.8% 45.8%
3227528 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.60 35.0 4.08e-01 95.2% 100.0%
3496419 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 47.0 2.65e-01 87.1% 10.4%
3266673 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 52.0 3.29e-01 100.0% 30.3%
3336515 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.59 52.0 3.32e-01 100.0% 30.5%
3802472 5.1.3.144 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.59 50.0 3.26e-01 100.0% 39.3%
4028413 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 44.0 2.72e-01 82.3% 28.8%
4346133 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.57 47.0 3.79e-01 100.0% 81.2%
3510850 3459.1.1.0 ↗ beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule 0.57 43.0 3.96e-01 87.1% 97.8%
3583675 5.1.4.321 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30361 0.57 47.0 2.96e-01 91.9% 35.0%
3466098 5.1.4.101 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF1618 0.57 49.0 3.17e-01 100.0% 41.2%
3765027 5.1.4.85 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › NOL11_N 0.57 48.0 2.99e-01 98.4% 42.4%
4945471 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.57 43.0 4.33e-01 100.0% 84.6%
3706905 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 45.0 4.19e-01 93.5% 85.9%
4106226 5.1.4.29 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PD40 0.54 47.0 3.07e-01 100.0% 30.5%
3642213 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.54 48.0 3.07e-01 100.0% 21.6%
4055111 4.1.1.7 ↗ beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 0.54 42.0 3.44e-01 88.7% 94.4%
3441510 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.54 46.0 3.10e-01 100.0% 43.7%
2426538 375.1.1.26 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.54 36.0 3.00e-01 71.0% 46.3%
4083857 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.54 44.0 3.54e-01 98.4% 70.7%
5035742 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 38.0 3.89e-01 82.3% 90.0%
4936051 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 39.0 4.05e-01 100.0% 96.4%
3462961 5.1.4.122 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF295 0.51 45.0 3.01e-01 100.0% 84.3%
3671668 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.51 43.0 3.20e-01 100.0% 80.5%
3799005 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.51 41.0 2.67e-01 100.0% 76.4%
3646441 2484.1.1.205 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › PF27035 0.51 39.0 3.38e-01 90.3% 71.8%
3784839 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.50 41.0 3.64e-01 96.8% 61.0%