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NC_047739.1__YP_009784004.1__HOQ89_gp100__00046
Bact-VirNC_047739.1__YP_009784004.1__HOQ89_gp100__00046
Identity
- Accession:
- NC_047739 ↗
- Kingdom:
- phage
Quality
60.3
mean pLDDT
Taxonomy
TaxID: 1225795
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 33-111
Domain cluster:
rep: NC_031927.1__YP_009323018.1__BOW86_gp085__00085__D3-79
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ln0A00 | 3.40.1440.10 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.80 | 74.0 | 7.01e-01 | 100.0% | 92.4% |
| 3gqqA00 | 2.70.50.40 | Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › GMP phosphodiesterase, delta subunit | 0.65 | 41.0 | 3.24e-01 | 75.9% | 30.5% |
| 1kshB00 | 2.70.50.40 | Mainly Beta › Distorted Sandwich › Coagulation Factor XIII; Chain A, domain 1 › GMP phosphodiesterase, delta subunit | 0.64 | 41.0 | 3.41e-01 | 75.9% | 36.6% |
| 1dx5M02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.63 | 46.0 | 4.00e-01 | 77.2% | 88.2% |
| 3h7lA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 42.0 | 4.00e-01 | 72.2% | 61.3% |
| 2b9lA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.60 | 43.0 | 3.49e-01 | 77.2% | 64.3% |
| 6x4tA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 42.0 | 3.69e-01 | 75.9% | 66.1% |
| 3no8A00 | 2.60.120.820 | Mainly Beta › Sandwich › Jelly Rolls › PHR domain | 0.58 | 40.0 | 3.22e-01 | 75.9% | 36.3% |
| 1ym0A02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.57 | 43.0 | 3.88e-01 | 82.3% | 86.6% |
| 3lrrA00 | 2.170.150.30 | Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › RIG-I-like receptor, C-terminal regulatory domain | 0.56 | 39.0 | 3.40e-01 | 72.2% | 80.2% |
| 3eipA00 | 3.10.50.20 | Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein | 0.54 | 41.0 | 4.04e-01 | 81.0% | 97.6% |
| 1g57A00 | 3.90.870.10 | Alpha Beta › Alpha-Beta Complex › DHBP synthase › DHBP synthase | 0.54 | 48.0 | 3.53e-01 | 98.7% | 77.6% |
| 1gz6A02 | 1.10.287.4290 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.53 | 35.0 | 3.93e-01 | 100.0% | 93.0% |
| 3ig5A02 | 3.30.590.50 | Alpha Beta › 2-Layer Sandwich › Creatine Kinase; Chain A, domain 2 › | 0.52 | 40.0 | 2.69e-01 | 86.1% | 82.7% |
| 1ifqB00 | 3.30.450.50 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain | 0.52 | 39.0 | 3.41e-01 | 82.3% | 93.0% |
| 2ynaA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.51 | 37.0 | 3.60e-01 | 77.2% | 97.7% |
| 4mzyA01 | 3.20.140.10 | Alpha Beta › Alpha-Beta Barrel › nicotinate phosphoribosyltransferase › nicotinate phosphoribosyltransferase | 0.51 | 42.0 | 2.96e-01 | 100.0% | 80.8% |
| 1go4A00 | 3.30.900.10 | Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain | 0.51 | 42.0 | 3.19e-01 | 92.4% | 89.3% |
| 6pl6B01 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.51 | 44.0 | 2.91e-01 | 100.0% | 90.1% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4344289 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.84 | 78.0 | 6.48e-01 | 100.0% | 66.9% |
| 77927 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.80 | 73.0 | 6.91e-01 | 100.0% | 90.4% |
| 4974405 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.76 | 65.0 | 6.24e-01 | 98.7% | 81.1% |
| 4947741 | 821.1.1.17 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF27096 | 0.75 | 63.0 | 6.20e-01 | 100.0% | 84.7% |
| 4977317 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.74 | 64.0 | 5.51e-01 | 100.0% | 62.2% |
| 3252771 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.71 | 65.0 | 6.34e-01 | 98.7% | 96.5% |
| 3889864 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.68 | 36.0 | 4.20e-01 | 70.9% | 72.7% |
| 5034209 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.67 | 41.0 | 4.66e-01 | 73.4% | 81.7% |
| 5055065 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.66 | 42.0 | 4.30e-01 | 75.9% | 68.0% |
| 4461109 | 11.1.1.48 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CelD_N | 0.64 | 42.0 | 4.01e-01 | 70.9% | 58.9% |
| 3257660 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 44.0 | 3.82e-01 | 77.2% | 57.6% |
| 3196091 | 708.1.2.0 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like | 0.60 | 41.0 | 3.71e-01 | 70.9% | 96.2% |
| 3267304 | 2492.1.1.17 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › MafB19-deam | 0.58 | 43.0 | 3.25e-01 | 79.7% | 74.1% |
| 3518924 | 11.1.1.76 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › GMP_PDE_delta | 0.58 | 42.0 | 3.10e-01 | 75.9% | 36.5% |
| 4028321 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.58 | 43.0 | 3.38e-01 | 82.3% | 68.6% |
| 3598676 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.58 | 42.0 | 3.17e-01 | 77.2% | 39.5% |
| 3167534 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.57 | 40.0 | 4.09e-01 | 72.2% | 100.0% |
| 3393247 | 2492.1.1.1 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › dCMP_cyt_deam_1 | 0.57 | 40.0 | 3.26e-01 | 74.7% | 57.8% |
| 3548981 | 11.1.1.99 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set | 0.56 | 40.0 | 3.57e-01 | 74.7% | 54.5% |
| 3474484 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 40.0 | 3.27e-01 | 74.7% | 43.4% |
| 3705774 | 223.2.1.42 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Synaptobrevin | 0.55 | 41.0 | 3.10e-01 | 83.5% | 66.2% |
| 3692761 | 11.1.1.832 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2_Mok13 | 0.54 | 36.0 | 3.28e-01 | 74.7% | 50.5% |
| 4944860 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.54 | 39.0 | 3.39e-01 | 81.0% | 87.9% |
| 5071231 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.53 | 40.0 | 3.39e-01 | 81.0% | 90.0% |
| 3691232 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.53 | 47.0 | 3.81e-01 | 98.7% | 85.3% |
| 5079497 | 304.139.1.2 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs | 0.53 | 37.0 | 2.74e-01 | 73.4% | 92.1% |
| 3818851 | 3343.1.1.2 ↗ | alpha complex topology › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › gamma-tubulin complex protein 4 (GCP4) › GCP_C_terminal,GCP_N_terminal | 0.53 | 41.0 | 2.45e-01 | 88.6% | 30.1% |
| 4997750 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.52 | 39.0 | 3.34e-01 | 81.0% | 92.6% |
| 3874464 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.52 | 43.0 | 2.87e-01 | 94.9% | 28.5% |
| 4011129 | 221.1.1.46 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › USP7_ICP0_bdg | 0.52 | 39.0 | 3.59e-01 | 82.3% | 65.7% |
| 4000826 | 10.4.1.1 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB | 0.51 | 38.0 | 3.24e-01 | 79.7% | 48.5% |
| 4999281 | 223.2.1.20 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_1 | 0.51 | 38.0 | 3.26e-01 | 82.3% | 92.1% |
| 3491164 | 2004.1.1.24 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom,Helicase_C | 0.51 | 38.0 | 2.27e-01 | 83.5% | 50.3% |
| 3925945 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.50 | 39.0 | 3.80e-01 | 94.9% | 75.6% |
| 3600630 | 3529.1.1.0 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain | 0.50 | 29.0 | 3.04e-01 | 79.7% | 58.7% |
| 3194132 | 223.2.1.9 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Sedlin_N | 0.50 | 37.0 | 2.96e-01 | 81.0% | 98.9% |
D2
high
residues 190-247