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NC_047744.1__YP_009784477.1__QLX39_gp171__00176

Bact-Vir

NC_047744.1__YP_009784477.1__QLX39_gp171__00176

Identity

Accession:
NC_047744 ↗
Kingdom:
phage

Quality

92.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Agatevirus› Bacillus_phage_Bp8p-T

TaxID: 1445811

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-91
PDB
Domain cluster: rep: OM982673.1__UPI12985.1__X__00006__D6-91
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.78 46.0 5.18e-01 83.3% 75.0%
2gukA00 3.30.2190.10 Alpha Beta › 2-Layer Sandwich › PG1857-like › PG1857-like 0.63 40.0 3.72e-01 97.8% 51.4%
2ffsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.60 48.0 4.08e-01 85.6% 76.6%
1p5dX04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.60 40.0 3.96e-01 86.7% 65.6%
3tfiA00 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.60 45.0 3.05e-01 81.1% 52.3%
3q63F00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.59 47.0 4.05e-01 85.6% 74.8%
2jmuA01 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.58 46.0 3.51e-01 86.7% 72.3%
4iuhA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.58 52.0 4.44e-01 100.0% 88.1%
4mmnA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.57 51.0 4.36e-01 97.8% 70.9%
1eq6A00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.57 50.0 3.98e-01 97.8% 63.0%
1vloA01 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.57 42.0 3.68e-01 80.0% 78.6%
1kfiA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.56 45.0 4.06e-01 86.7% 69.6%
3mmhA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.56 49.0 4.06e-01 97.8% 61.1%
3h0lA00 3.90.1300.10 Alpha Beta › Alpha-Beta Complex › Amidase signature (AS) enzymes › Amidase signature (AS) domain 0.56 46.0 2.98e-01 92.2% 72.6%
4paaA03 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.56 42.0 3.32e-01 80.0% 73.0%
3o5yB00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.56 49.0 4.19e-01 97.8% 73.5%
2l48A00 3.30.70.2030 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 38.0 3.88e-01 82.2% 72.9%
2w1rA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.56 48.0 4.49e-01 97.8% 80.3%
3p01A02 3.30.450.340 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.55 44.0 4.39e-01 86.7% 100.0%
3ci6B00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.55 48.0 3.98e-01 97.8% 64.8%
3by8A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.55 44.0 3.87e-01 86.7% 58.6%
3licA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 43.0 3.46e-01 86.7% 56.7%
3dbaA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.54 46.0 3.82e-01 97.8% 71.3%
7lscA01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.54 46.0 3.97e-01 97.8% 75.8%
3k2nA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.53 46.0 3.77e-01 97.8% 64.4%
3bjnA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.53 46.0 3.86e-01 97.8% 81.5%
2dc0A00 3.90.1300.10 Alpha Beta › Alpha-Beta Complex › Amidase signature (AS) enzymes › Amidase signature (AS) domain 0.53 44.0 2.92e-01 94.4% 71.2%
4ywzB00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.53 43.0 3.64e-01 86.7% 56.8%
3hcyA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.53 46.0 3.99e-01 97.8% 71.0%
8es5A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 41.0 3.64e-01 86.7% 69.6%
3ms6A00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.52 40.0 4.04e-01 86.7% 81.1%
2qkpD00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 41.0 3.66e-01 86.7% 76.1%
3caxA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 42.0 3.63e-01 87.8% 71.0%
1shsA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 36.0 3.38e-01 74.4% 66.1%
2veaA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 40.0 3.62e-01 87.8% 71.5%
2rb7A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.50 42.0 3.08e-01 93.3% 78.7%
3aabB00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 36.0 3.41e-01 74.4% 69.8%
1qwyA02 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.50 41.0 3.36e-01 91.1% 60.5%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4937199 331.2.1.1 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.65 43.0 4.43e-01 85.6% 70.5%
3283279 881.1.1.15 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › DUF3558 0.61 51.0 4.48e-01 97.8% 62.3%
3288418 331.3.1.9 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.61 49.0 4.02e-01 85.6% 73.8%
4440403 12.4.1.1 ↗ beta sandwiches › Glycosyl hydrolase domain-like › V-region of surface antigen I/II (SA I/II, PAC) › V-region of surface antigen I/II (SA I/II, PAC) 0.59 40.0 2.40e-01 71.1% 20.0%
4007507 223.1.1.3 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.59 52.0 4.07e-01 97.8% 58.5%
3856375 331.3.1.3 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.59 46.0 3.46e-01 84.4% 56.4%
4988946 223.1.1.23 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_2 0.58 52.0 4.15e-01 98.9% 63.3%
3490910 304.107.1.1 ↗ a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › GCV_T 0.58 42.0 3.43e-01 83.3% 39.4%
3055841 3523.1.1.2 ↗ beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › LptD_N 0.58 44.0 3.85e-01 80.0% 60.2%
4984661 300.1.1.0 ↗ a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.57 49.0 4.35e-01 100.0% 97.1%
3510133 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.57 50.0 4.06e-01 97.8% 64.7%
4947136 331.2.1.0 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.57 39.0 3.98e-01 87.8% 72.2%
4201123 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.56 50.0 4.04e-01 97.8% 57.1%
4651806 223.1.1.26 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_3 0.56 49.0 4.00e-01 97.8% 57.7%
4960176 223.1.1.23 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_2 0.56 49.0 3.51e-01 97.8% 40.4%
4441048 223.1.1.30 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › SpoVT_C 0.56 49.0 4.38e-01 97.8% 73.4%
4943530 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.56 48.0 3.95e-01 97.8% 66.3%
3645309 4099.1.1.27 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › DUF7806 0.56 40.0 4.01e-01 82.2% 73.4%
3717699 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.56 41.0 3.12e-01 93.3% 30.9%
3388102 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.55 36.0 4.01e-01 78.9% 90.8%
3594509 331.2.1.0 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.55 44.0 3.83e-01 86.7% 65.5%
3410208 331.17.1.1 ↗ a+b two layers › TBP-like › Atp11 › Atp11 › ATP11 0.55 44.0 3.54e-01 85.6% 50.6%
3258204 331.17.1.1 ↗ a+b two layers › TBP-like › Atp11 › Atp11 › ATP11 0.55 44.0 3.53e-01 85.6% 51.2%
3282901 223.1.1.35 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › sCache_3_2 0.54 42.0 2.84e-01 86.7% 21.7%
4008730 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 47.0 4.02e-01 97.8% 72.7%
5034546 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.54 43.0 4.12e-01 85.6% 92.4%
4981301 304.39.1.1 ↗ a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd 0.54 34.0 3.34e-01 84.4% 60.0%
3701944 331.17.1.1 ↗ a+b two layers › TBP-like › Atp11 › Atp11 › ATP11 0.53 43.0 3.44e-01 86.7% 50.3%
3537588 331.17.1.1 ↗ a+b two layers › TBP-like › Atp11 › Atp11 › ATP11 0.53 42.0 3.40e-01 85.6% 49.7%
4986976 223.1.1.25 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_9 0.53 42.0 3.83e-01 85.6% 85.8%
4582465 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 48.0 4.50e-01 100.0% 92.7%
3597646 331.17.1.0 ↗ a+b two layers › TBP-like › Atp11 › Atp11 0.53 42.0 3.42e-01 86.7% 50.3%
3618922 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.53 36.0 3.56e-01 76.7% 66.3%
4980371 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.53 33.0 3.39e-01 72.2% 64.8%
5031493 319.1.1.23 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF29697 0.52 32.0 3.46e-01 72.2% 71.8%
3369480 304.9.1.6 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › Smg4_UPF3 0.52 43.0 3.91e-01 92.2% 95.2%
4680120 60.1.1.3 ↗ beta barrels › SPOC domain-like › SPOC domain-related › SPOC domain › Sld7_N 0.52 41.0 3.53e-01 88.9% 53.6%
3476117 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.52 38.0 3.57e-01 80.0% 61.7%
3994621 844.1.1.0 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.52 40.0 3.11e-01 85.6% 80.0%
4586436 223.1.1.7 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › Autoind_bind 0.52 45.0 3.66e-01 98.9% 65.0%
4026435 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.51 46.0 4.14e-01 100.0% 86.4%
4929462 873.1.1.0 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.51 38.0 3.52e-01 86.7% 61.7%
5047293 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.51 40.0 3.58e-01 85.6% 76.9%
1780023 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 39.0 3.89e-01 88.9% 77.4%
3302402 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.51 37.0 3.63e-01 77.8% 91.0%
4028345 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.51 37.0 3.21e-01 76.7% 66.4%
4939095 319.1.1.4 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 0.51 32.0 3.44e-01 72.2% 74.7%
2121270 223.1.1.6 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › dCache_1 0.51 40.0 3.95e-01 88.9% 82.1%
4001313 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 44.0 3.58e-01 97.8% 86.9%
2844761 5.1.2.5 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_68 0.51 44.0 2.91e-01 100.0% 93.5%
5049357 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 41.0 3.86e-01 97.8% 72.7%
4955080 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.50 34.0 3.43e-01 74.4% 67.4%
3472532 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 45.0 3.87e-01 100.0% 91.7%