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NC_047751.1__YP_009785059.1__HOR02_gp22__00022

Bact-Vir

NC_047751.1__YP_009785059.1__HOR02_gp22__00022

Identity

Accession:
NC_047751 ↗
Kingdom:
phage

Quality

90.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-76
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF25755.2 best Phage_T3_1_05 77.9 6.50e-22 98.6% 95.9%
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4azpA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.68 51.0 4.23e-01 80.8% 94.0%
2rcqA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.68 52.0 4.17e-01 82.2% 93.6%
1vyfA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.66 50.0 4.11e-01 80.8% 93.3%
3w9kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.64 47.0 3.87e-01 78.1% 92.6%
1p6pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 47.0 3.96e-01 82.2% 98.4%
2af5A01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.62 38.0 4.27e-01 97.3% 83.3%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 43.0 4.63e-01 100.0% 93.0%
1mdcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 46.0 3.86e-01 82.2% 96.9%
2a0aA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 46.0 3.81e-01 82.2% 95.4%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 37.0 4.00e-01 75.3% 75.4%
4kc7A02 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.59 43.0 3.95e-01 78.1% 96.0%
3bg3A01 3.10.600.10 Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain 0.59 45.0 4.12e-01 83.6% 86.1%
1ohfA03 2.60.270.70 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › 0.59 44.0 3.60e-01 80.8% 82.3%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.59 49.0 4.27e-01 91.8% 92.9%
1z4vA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.59 49.0 3.00e-01 91.8% 88.7%
6qp7A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 48.0 2.86e-01 87.7% 94.4%
6c1zA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 51.0 4.16e-01 100.0% 92.8%
4hntA04 3.10.600.10 Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain 0.57 44.0 4.00e-01 84.9% 86.1%
6mv2A01 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 44.0 3.98e-01 91.8% 60.8%
3tw6D02 3.10.600.10 Alpha Beta › Roll › pyruvate carboxylase f1077a mutant fold › pyruvate carboxylase f1077a mutant domain 0.57 44.0 4.34e-01 83.6% 81.6%
8aa0E01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.56 46.0 3.05e-01 90.4% 69.6%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 49.0 4.10e-01 100.0% 96.1%
5jozA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 45.0 2.99e-01 90.4% 63.9%
1fr3A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.55 36.0 3.71e-01 76.7% 71.6%
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.55 41.0 3.83e-01 100.0% 63.2%
2v5yA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 40.0 3.61e-01 78.1% 90.2%
1azpA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 42.0 4.42e-01 91.8% 90.9%
4uf7B00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.55 50.0 3.08e-01 100.0% 36.9%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.54 37.0 3.90e-01 100.0% 80.0%
7obmA01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.54 44.0 2.93e-01 90.4% 57.6%
2ntkB00 3.60.20.20 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Inosine monophosphate cyclohydrolase-like 0.54 45.0 3.32e-01 93.2% 97.5%
6gszA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 42.0 3.79e-01 84.9% 95.1%
3ufiA02 2.60.40.2630 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 43.0 3.59e-01 87.7% 80.8%
5b71E00 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.53 41.0 3.77e-01 82.2% 92.5%
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.53 46.0 4.36e-01 97.3% 84.4%
5jtwA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 41.0 3.69e-01 83.6% 93.1%
1cbiA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 47.0 3.86e-01 100.0% 96.3%
1ealA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 46.0 3.89e-01 100.0% 94.5%
1pz7A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 45.0 3.40e-01 97.3% 73.9%
2wkkA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 46.0 3.70e-01 100.0% 78.7%
3o4hA01 2.130.10.150 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Peptidase/esterase 'gauge' domain 0.52 40.0 2.68e-01 83.6% 39.7%
2i51B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 36.0 2.77e-01 75.3% 81.7%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.51 37.0 4.00e-01 100.0% 100.0%
2hhzA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 37.0 3.12e-01 100.0% 42.0%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.51 43.0 3.87e-01 95.9% 97.1%
2r41A00 3.10.450.150 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein 0.51 43.0 3.85e-01 94.5% 82.5%
1n26A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 41.0 3.68e-01 90.4% 96.3%
1e2tA03 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.51 38.0 3.34e-01 82.2% 78.6%
1h54A03 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.50 38.0 3.83e-01 83.6% 78.4%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3574708 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 46.0 5.37e-01 82.2% 98.0%
3215657 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.69 52.0 4.22e-01 79.5% 83.7%
3795930 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.69 52.0 4.18e-01 80.8% 93.5%
3370663 896.1.1.1 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Ribosomal_L38e 0.65 48.0 5.28e-01 84.9% 96.6%
4031110 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 55.0 4.61e-01 94.5% 83.2%
4116346 3675.1.1.0 a+b complex topology › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain › DNA gyrase subunit B insertion domain 0.64 44.0 3.47e-01 72.6% 56.9%
4023075 5.1.4.383 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › VPS11_N 0.64 52.0 3.37e-01 87.7% 24.1%
4940152 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.64 38.0 3.31e-01 74.0% 37.4%
3283097 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.63 52.0 4.57e-01 100.0% 60.0%
3913372 5.1.4.242 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PEP5_VPS11_N 0.63 52.0 3.32e-01 87.7% 38.5%
4962224 220.1.1.87 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_3 0.63 53.0 4.06e-01 91.8% 81.2%
3385764 4954.1.1.0 a+b complex topology › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit 0.63 45.0 4.47e-01 75.3% 84.0%
3280641 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.62 50.0 4.52e-01 100.0% 64.0%
4188283 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.62 46.0 4.45e-01 78.1% 81.2%
3606916 5.1.12.3 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › PERK and Ire1 luminal domains › WD40 0.62 50.0 3.24e-01 87.7% 92.7%
4101502 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.62 40.0 4.46e-01 98.6% 90.7%
3704047 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.61 51.0 3.10e-01 90.4% 70.2%
4177200 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.61 41.0 4.47e-01 100.0% 90.9%
4963741 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.61 38.0 3.24e-01 74.0% 36.8%
5013360 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.61 39.0 3.63e-01 75.3% 50.5%
3627380 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 50.0 3.21e-01 89.0% 38.2%
4538358 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.60 49.0 4.19e-01 87.7% 64.3%
3567966 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.60 47.0 4.33e-01 84.9% 87.4%
4939095 319.1.1.4 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 0.60 48.0 4.79e-01 89.0% 82.7%
1260456 283.1.1.3 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Pantoate_ligase 0.59 42.0 4.04e-01 80.8% 65.9%
4938191 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 48.0 4.34e-01 91.8% 85.4%
4368436 5.1.4.12 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.59 49.0 3.22e-01 90.4% 75.9%
3855803 319.1.1.3 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.59 44.0 3.89e-01 87.7% 53.6%
3611446 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 47.0 3.10e-01 86.3% 51.7%
5006353 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.58 37.0 3.33e-01 75.3% 44.8%
4962615 319.1.1.4 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 0.58 45.0 4.13e-01 87.7% 64.2%
1171961 809.2.1.0 a+b two layers › BLIP-like › BT0923-like › BT0923-like 0.58 41.0 4.41e-01 89.0% 87.3%
3921165 4004.1.1.0 beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like 0.58 51.0 4.04e-01 100.0% 61.3%
3404526 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 44.0 4.09e-01 83.6% 92.6%
5062851 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 45.0 4.14e-01 84.9% 95.8%
3925021 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.57 51.0 4.17e-01 100.0% 94.8%
4478612 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.57 36.0 3.07e-01 78.1% 38.3%
3509387 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.57 50.0 4.30e-01 100.0% 92.5%
4967968 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.57 45.0 3.98e-01 89.0% 59.0%
3475799 220.1.1.7 beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.57 52.0 4.30e-01 100.0% 59.2%
3520059 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.57 50.0 4.28e-01 100.0% 95.0%
3832602 708.1.1.0 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain 0.57 45.0 3.97e-01 94.5% 58.2%
3941391 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 38.0 4.09e-01 89.0% 83.3%
3509499 719.1.1.2 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain › XLF 0.56 51.0 4.32e-01 100.0% 63.3%
3936403 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 42.0 3.71e-01 79.5% 93.3%
4472438 220.4.1.10 beta barrels › PH domain-like › second barrel domain in viral glycoproteins › second barrel domain in viral glycoproteins › DUF3586 0.56 45.0 4.40e-01 94.5% 98.8%
2103558 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.56 50.0 4.05e-01 100.0% 90.6%
3610541 73.1.1.11 beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › DUF3586 0.56 47.0 4.51e-01 97.3% 100.0%
3511086 5.1.4.169 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.56 49.0 3.16e-01 97.3% 87.2%
5031493 319.1.1.23 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF29697 0.56 43.0 4.25e-01 87.7% 78.2%
3164388 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.56 37.0 3.85e-01 75.3% 75.4%
4413835 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.55 35.0 2.92e-01 76.7% 35.1%
3769483 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.55 49.0 4.13e-01 100.0% 94.4%
3937407 11.1.4.7 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › TTR-52 0.55 44.0 3.77e-01 87.7% 79.2%
4028412 319.1.1.3 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.55 42.0 3.75e-01 91.8% 55.5%
4570530 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.55 41.0 3.74e-01 82.2% 91.3%
5028185 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 38.0 3.77e-01 74.0% 97.5%
4195832 9.1.1.24 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin_7 0.55 49.0 4.07e-01 100.0% 82.3%
5020056 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.55 38.0 3.32e-01 74.0% 46.6%
4025866 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 48.0 3.10e-01 97.3% 88.4%
5020903 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.54 43.0 4.05e-01 89.0% 70.0%
4943962 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 42.0 3.79e-01 86.3% 92.4%
5002276 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.54 42.0 4.21e-01 90.4% 82.7%
4094888 12.3.1.41 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Raffinose_syn 0.53 42.0 3.11e-01 86.3% 62.1%
5054047 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.53 39.0 3.87e-01 90.4% 77.3%
3980114 3860.1.1.158 alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm › ThrE 0.52 44.0 3.51e-01 93.2% 51.3%
3928219 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 41.0 3.84e-01 84.9% 96.7%
3796352 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.51 37.0 3.90e-01 97.3% 84.6%
3281618 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.51 44.0 4.01e-01 100.0% 73.0%
4104247 5.1.4.36 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.51 43.0 2.70e-01 97.3% 81.6%