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NC_047762.1__YP_009785923.1__HOR13_gp38__00017

Bact-Vir

NC_047762.1__YP_009785923.1__HOR13_gp38__00017

Identity

Accession:
NC_047762 ↗
Kingdom:
phage

Quality

80.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 5-49
PDB
Domain cluster: representative
CATH (79)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ra8A01 2.20.140.10 Mainly Beta › Single Sheet › q64v53_bacfr protein fold › WGR domain 0.91 84.0 6.95e-01 100.0% 63.5%
3qijB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.86 77.0 6.10e-01 100.0% 50.6%
7z6eA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.84 77.0 5.49e-01 100.0% 51.6%
1qqgA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.84 74.0 5.50e-01 95.6% 43.7%
1u5dA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.83 75.0 5.58e-01 100.0% 48.1%
6le1A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.82 60.0 5.18e-01 77.8% 95.6%
4hhvA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.82 73.0 5.51e-01 100.0% 43.7%
7t8tA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.80 69.0 4.96e-01 100.0% 49.6%
2fjlA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.80 68.0 4.75e-01 100.0% 34.7%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.79 68.0 5.63e-01 100.0% 61.4%
4jdmA02 6.10.250.2680 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.79 38.0 3.34e-01 84.4% 33.3%
2zkmX01 2.30.29.240 Mainly Beta › Roll › PH-domain like › 0.78 66.0 4.32e-01 100.0% 35.0%
1ntyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.78 68.0 4.95e-01 100.0% 40.3%
4khbC00 2.30.29.210 Mainly Beta › Roll › PH-domain like › FACT complex subunit Spt16p/Cdc68p 0.76 65.0 5.00e-01 100.0% 55.7%
1mixA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.75 60.0 4.81e-01 100.0% 44.1%
1h4rA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.75 61.0 5.06e-01 100.0% 49.5%
1maiA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.75 62.0 4.68e-01 97.8% 48.7%
1nr0A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.72 54.0 3.26e-01 100.0% 12.2%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.72 59.0 5.01e-01 97.8% 58.7%
2rgnB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.70 58.0 4.38e-01 100.0% 40.7%
3zqmA00 6.10.140.2160 Special › Helix non-globular › Helix Hairpins › 0.70 33.0 3.02e-01 86.7% 32.2%
3bpvA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 47.0 3.32e-01 71.1% 73.7%
6ui4A01 1.20.120.720 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Myosin VI head, motor domain, U50 subdomain 0.69 59.0 4.84e-01 100.0% 89.8%
3k2zA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.68 50.0 3.74e-01 100.0% 30.3%
3ly1D01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.68 55.0 3.92e-01 88.9% 63.6%
4ioyX02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.68 56.0 4.26e-01 97.8% 43.5%
4qjiB00 3.40.50.10300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CoaB-like 0.68 54.0 3.51e-01 100.0% 19.0%
1xfsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.67 53.0 3.69e-01 88.9% 89.6%
1bqnA05 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.67 56.0 4.12e-01 100.0% 71.0%
5umsA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 54.0 4.29e-01 97.8% 47.1%
2yx6D01 3.30.420.130 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Dinitrogenase iron-molybdenum cofactor biosynthesis domain 0.65 48.0 3.70e-01 80.0% 59.8%
4h0pA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.65 55.0 3.64e-01 100.0% 31.4%
2wdtC02 3.30.1490.420 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ubiquitin carboxyl-terminal hydrolase, domain 2 0.65 54.0 4.33e-01 100.0% 45.5%
3nqoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 45.0 2.95e-01 73.3% 58.2%
4ifeA02 3.30.420.240 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.64 54.0 3.53e-01 100.0% 22.5%
1jgsA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 41.0 2.92e-01 95.6% 21.7%
2f7lA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.63 48.0 3.95e-01 84.4% 98.8%
8agaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 41.0 2.99e-01 95.6% 23.8%
3zmdA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 41.0 2.89e-01 95.6% 20.9%
3qfmA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.62 38.0 2.35e-01 100.0% 9.7%
3hrgA02 3.30.420.260 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, C-terminal domain 0.62 52.0 3.98e-01 100.0% 65.8%
2qbyA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 44.0 3.52e-01 100.0% 37.8%
4em2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 42.0 2.87e-01 71.1% 68.7%
1fhoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 49.0 3.74e-01 93.3% 39.5%
3m4aA03 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.61 52.0 3.94e-01 100.0% 50.8%
3hvnA01 3.90.840.10 Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain 0.61 47.0 3.26e-01 91.1% 73.3%
3djcB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.61 50.0 4.20e-01 100.0% 92.0%
1gqyB02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.61 51.0 3.35e-01 97.8% 23.5%
2avxA00 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.60 48.0 3.35e-01 95.6% 38.6%
1jx4A04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.60 49.0 3.89e-01 95.6% 56.1%
3bexA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.60 49.0 3.80e-01 97.8% 79.5%
5cflA02 3.40.50.12100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Stimulator of interferon genes protein 0.59 49.0 3.54e-01 100.0% 69.4%
2w9jA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.59 48.0 4.29e-01 100.0% 71.8%
1pfoA01 3.90.840.10 Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain 0.58 46.0 3.09e-01 88.9% 36.1%
4am6A02 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.58 43.0 2.98e-01 100.0% 23.2%
3c4bA02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 48.0 4.31e-01 97.8% 83.6%
1vzyA01 3.55.30.10 Alpha Beta › 3-Layer(bab) Sandwich › Hsp33 domain › Hsp33 domain 0.57 48.0 3.11e-01 97.8% 72.6%
3ihlB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 46.0 3.05e-01 100.0% 55.0%
1hp7A01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.57 48.0 3.79e-01 95.6% 63.2%
2g8yA02 3.30.1370.60 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, NADPH binding domain 0.56 44.0 2.84e-01 86.7% 18.8%
1bm9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 47.0 3.56e-01 100.0% 76.7%
3fkdA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.55 44.0 3.50e-01 100.0% 65.2%
4e1pA00 3.30.60.230 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain 0.55 39.0 3.81e-01 86.7% 63.6%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.55 45.0 3.32e-01 93.3% 34.2%
4zyaB00 3.30.1910.20 Alpha Beta › 2-Layer Sandwich › so0334 like fold › asparaginyl-tRNA synthetase, N-terminal domain 0.55 45.0 3.72e-01 100.0% 52.6%
2xzmZ00 3.30.1230.20 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › Ribosomal protein S21 0.55 39.0 3.28e-01 84.4% 51.5%
6ro0B02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 46.0 3.53e-01 100.0% 46.4%
3bjaA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 37.0 2.60e-01 88.9% 23.0%
2p1jA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.54 44.0 3.24e-01 100.0% 78.3%
5r0dB01 2.60.34.20 Mainly Beta › Sandwich › Substrate Binding Domain Of DNAk; Chain A, domain 1 › 0.54 43.0 3.11e-01 95.6% 42.7%
2nyxB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 47.0 3.28e-01 100.0% 72.5%
5utkA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 41.0 3.46e-01 93.3% 54.4%
3bzvB00 3.40.1690.10 Alpha Beta › 3-Layer(aba) Sandwich › name from scop › secretion proteins EscU 0.53 36.0 3.22e-01 77.8% 48.8%
1epwA01 3.90.1240.10 Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" 0.53 43.0 2.55e-01 100.0% 45.7%
3ke2B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 37.0 2.93e-01 95.6% 35.4%
5kfzA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.52 41.0 3.20e-01 95.6% 55.3%
2bmoB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 40.0 2.71e-01 86.7% 40.2%
1lc5A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.52 39.0 3.11e-01 97.8% 55.2%
3cjlA00 3.10.20.850 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Protein of unknown function DUF3861 0.51 44.0 3.54e-01 100.0% 65.9%
ECOD (83)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3947081 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.90 81.0 7.14e-01 100.0% 73.4%
3622909 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.88 79.0 5.70e-01 100.0% 41.7%
3575735 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.87 78.0 5.66e-01 100.0% 41.7%
3452316 220.1.1.187 beta barrels › PH domain-like › PH domain-like › PH domain-like › VPS13_C 0.87 78.0 5.20e-01 100.0% 40.0%
3486831 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.86 76.0 4.70e-01 100.0% 18.4%
3484357 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.86 75.0 5.57e-01 97.8% 44.5%
3446884 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.86 76.0 6.54e-01 100.0% 68.6%
3487889 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.86 74.0 5.32e-01 95.6% 48.3%
3479756 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.85 77.0 5.77e-01 100.0% 42.9%
3414272 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.85 70.0 5.52e-01 100.0% 44.2%
3501913 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.85 75.0 5.25e-01 100.0% 32.1%
3843072 192.8.1.0 alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.85 74.0 4.52e-01 100.0% 16.7%
4076629 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.85 74.0 4.50e-01 100.0% 16.4%
3212968 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.85 75.0 5.26e-01 100.0% 34.8%
None 0.84 75.0 5.66e-01 100.0% 46.7%
3267918 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.84 71.0 6.64e-01 97.8% 76.4%
4937559 220.1.1.76 beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.83 74.0 5.85e-01 100.0% 62.2%
3231448 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.83 72.0 4.86e-01 100.0% 27.3%
4889666 11.2.1.117 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PI-PLC-Y 0.83 72.0 5.32e-01 100.0% 44.1%
4623301 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.83 74.0 5.74e-01 100.0% 63.2%
4110879 220.1.1.22 beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.82 71.0 5.03e-01 100.0% 33.3%
3497948 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.81 65.0 5.55e-01 91.1% 74.7%
1177137 220.1.1.43 beta barrels › PH domain-like › PH domain-like › PH domain-like › SIN1_PH 0.80 70.0 5.42e-01 100.0% 48.0%
3492666 220.1.1.151 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_MRCK 0.80 70.0 5.95e-01 100.0% 78.7%
3798182 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.80 70.0 5.12e-01 100.0% 37.5%
3211748 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.80 70.0 4.91e-01 100.0% 48.6%
3452440 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.80 69.0 5.15e-01 100.0% 46.1%
3508680 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.80 69.0 5.28e-01 100.0% 48.6%
3476563 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.79 68.0 5.04e-01 100.0% 55.0%
3511590 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.79 65.0 5.02e-01 100.0% 41.0%
4974740 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.78 64.0 4.79e-01 100.0% 36.4%
3266702 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.77 68.0 5.32e-01 100.0% 50.5%
3514009 5.1.4.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.77 60.0 3.63e-01 100.0% 13.0%
3859768 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.76 67.0 4.48e-01 100.0% 36.0%
3719687 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.76 64.0 5.48e-01 97.8% 64.0%
5047859 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.76 61.0 5.28e-01 100.0% 57.1%
3949336 220.1.1.216 beta barrels › PH domain-like › PH domain-like › PH domain-like › Helicase_IV_N 0.76 64.0 4.87e-01 100.0% 42.7%
3943930 4325.1.1.0 mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.74 62.0 6.01e-01 93.3% 94.0%
3526919 1021.1.1.0 a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.74 55.0 4.42e-01 100.0% 40.0%
3900377 220.1.1.41 beta barrels › PH domain-like › PH domain-like › PH domain-like › Sharpin_PH 0.73 60.0 4.53e-01 100.0% 36.0%
3255946 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.73 63.0 5.20e-01 100.0% 55.0%
3536117 220.1.1.66 beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.73 61.0 4.33e-01 100.0% 33.3%
3407322 220.1.1.52 beta barrels › PH domain-like › PH domain-like › PH domain-like › SNX17_FERM_C 0.72 63.0 4.88e-01 100.0% 47.0%
4207636 220.1.1.7 beta barrels › PH domain-like › PH domain-like › PH domain-like › IRS 0.72 59.0 4.58e-01 100.0% 41.0%
3581945 220.1.1.132 beta barrels › PH domain-like › PH domain-like › PH domain-like › KRIT1_FRMD8_FERM_C 0.71 58.0 5.42e-01 100.0% 71.7%
3575385 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.71 61.0 4.78e-01 100.0% 46.0%
3991351 220.1.1.4 beta barrels › PH domain-like › PH domain-like › PH domain-like › Ran_BP1 0.71 61.0 4.28e-01 100.0% 33.1%
3726634 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.70 58.0 4.92e-01 97.8% 97.5%
4948172 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.69 55.0 4.37e-01 100.0% 42.1%
4024504 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 56.0 4.44e-01 95.6% 48.0%
3278704 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.66 52.0 4.57e-01 100.0% 71.2%
3164493 2484.1.1.76 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_3C 0.66 57.0 3.71e-01 100.0% 22.7%
4451022 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.66 54.0 4.13e-01 100.0% 45.0%
4956846 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.65 56.0 4.69e-01 100.0% 92.5%
3722216 220.1.1.70 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_5 0.65 54.0 3.87e-01 100.0% 50.3%
3169426 109.26.1.1 alpha superhelices › Repetitive alpha hairpins › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nuclear pore complex component Nup133/Nup170/Nup157 C-terminal domains › Nucleoporin_C 0.65 46.0 2.50e-01 75.6% 4.4%
4984224 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.65 56.0 4.42e-01 100.0% 77.9%
4557416 3937.1.1.1 alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Connexin 0.65 45.0 2.76e-01 73.3% 14.9%
5022447 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.65 54.0 4.03e-01 100.0% 62.4%
3920905 220.1.1.19 beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.64 52.0 3.94e-01 97.8% 38.7%
4106397 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.64 55.0 4.66e-01 97.8% 81.3%
3290519 220.1.1.116 beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF6585 0.64 52.0 4.49e-01 100.0% 56.2%
4648749 101.1.2.274 alpha arrays › HTH › HTH › winged helix domain › SgrR_N 0.63 45.0 3.25e-01 97.8% 28.3%
3446029 859.1.1.1 a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › HORMA 0.61 52.0 3.66e-01 100.0% 33.5%
1877618 330.15.1.1 a+b two layers › dsRBD-like › VtrA protein periplasmic domain › VtrA protein periplasmic domain › VtrA_C 0.61 48.0 3.98e-01 95.6% 46.7%
3516872 4006.1.1.4 alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › TraG_N 0.60 46.0 3.07e-01 88.9% 19.5%
3599685 2004.1.1.250 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.60 52.0 3.02e-01 100.0% 76.5%
3588306 101.1.2.15 alpha arrays › HTH › HTH › winged helix domain › MarR 0.60 43.0 3.02e-01 93.3% 25.0%
4953244 300.1.1.0 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.59 47.0 3.35e-01 91.1% 29.3%
1144832 2484.1.1.63 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF3822 0.59 51.0 4.06e-01 100.0% 48.0%
5005164 101.1.2.101 alpha arrays › HTH › HTH › winged helix domain › Cdc6_C 0.58 46.0 3.44e-01 97.8% 35.2%
3281018 330.2.1.0 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) 0.58 51.0 3.94e-01 97.8% 57.0%
1193604 3016.1.1.1 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_1_2 0.57 45.0 3.66e-01 93.3% 80.2%
4281749 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.55 44.0 3.38e-01 95.6% 54.2%
3600134 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 43.0 3.56e-01 97.8% 85.0%
3586898 101.1.2.26 alpha arrays › HTH › HTH › winged helix domain › HxlR 0.55 40.0 3.07e-01 77.8% 39.8%
4461866 3326.1.1.1 alpha arrays › DNA-binding domain in UvrA › DNA-binding domain in UvrA › DNA-binding domain in UvrA › UvrA_DNA-bind 0.55 37.0 2.78e-01 95.6% 29.1%
4297175 218.1.1.8 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA 0.54 41.0 3.57e-01 100.0% 54.4%
1834407 3218.1.1.1 a+b duplicates or obligate multimers › small terminase oligomerization domain › small terminase oligomerization domain › small terminase oligomerization domain › Terminase_2 0.53 40.0 3.32e-01 82.2% 56.4%
4037619 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.52 47.0 3.75e-01 100.0% 76.5%
3971431 241.11.1.0 a+b two layers › Type III secretory system chaperone-like › YjbR-like › YjbR-like 0.52 42.0 3.60e-01 100.0% 56.0%
3376006 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.51 43.0 2.86e-01 100.0% 31.9%
4115186 245.1.1.1 a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 › RNase_PH_C 0.50 45.0 3.56e-01 100.0% 73.3%
D2 medium residues 62-98
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1aisA02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.79 66.0 4.99e-01 94.6% 62.1%
1qnaA01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.79 68.0 5.09e-01 100.0% 62.4%
3i3lA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.77 65.0 3.70e-01 100.0% 10.1%
1cdwA02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.75 61.0 4.73e-01 94.6% 62.8%
4uriA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.75 61.0 5.35e-01 97.3% 98.3%
4mnkA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.71 58.0 4.94e-01 97.3% 98.5%
4a2lB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.71 60.0 3.56e-01 100.0% 98.7%
5bukB00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.71 60.0 3.41e-01 100.0% 9.2%
2d0bA01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.70 56.0 4.41e-01 100.0% 60.7%
4paaA02 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.69 58.0 3.85e-01 100.0% 24.1%
3alfA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.69 54.0 4.60e-01 97.3% 98.6%
4msxA02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.69 52.0 3.04e-01 83.8% 86.4%
1bagA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.67 52.0 4.31e-01 100.0% 44.9%
6inxA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.66 52.0 4.54e-01 97.3% 98.5%
4xpmB00 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.65 52.0 4.51e-01 100.0% 97.0%
1goiA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.64 50.0 4.00e-01 100.0% 98.9%
1kfwA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.64 51.0 4.50e-01 100.0% 98.4%
2n54B00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 53.0 4.49e-01 100.0% 60.6%
4iapA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 54.0 4.06e-01 100.0% 70.7%
2g3mA04 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.62 52.0 3.99e-01 100.0% 40.4%
3rfoA02 3.10.25.10 Alpha Beta › Roll › Methionyl-tRNA Fmet Formyltransferase; Chain A, domain 2 › Formyl transferase, C-terminal domain 0.60 46.0 3.60e-01 100.0% 35.2%
1q8rA00 3.30.1330.70 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Holliday junction resolvase RusA 0.57 48.0 3.41e-01 100.0% 97.5%
2ea9A01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 39.0 3.34e-01 100.0% 94.7%
2de6A02 2.20.25.680 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.54 40.0 3.76e-01 100.0% 98.3%
1mzpA01 3.30.190.20 Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribosomal protein L1/L10, rRNA-binding domain 0.52 42.0 3.01e-01 97.3% 91.3%
1svbA04 2.60.40.350 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 35.0 2.79e-01 78.4% 85.4%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4049263 304.102.1.1 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 0.83 72.0 4.40e-01 100.0% 18.1%
4943894 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.81 71.0 5.24e-01 100.0% 61.1%
4243244 304.102.1.1 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 0.81 69.0 4.21e-01 100.0% 17.4%
5054464 331.1.1.1 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.80 70.0 5.34e-01 100.0% 65.9%
4053223 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.79 68.0 4.81e-01 100.0% 33.9%
3510576 331.1.1.1 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.79 68.0 5.32e-01 100.0% 72.5%
4936584 331.1.1.1 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.78 67.0 4.99e-01 100.0% 60.0%
3421867 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.78 67.0 4.01e-01 100.0% 15.8%
3510568 331.1.1.1 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.78 66.0 4.95e-01 100.0% 58.9%
4021508 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.78 66.0 4.91e-01 100.0% 56.0%
5041117 2003.1.3.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.77 63.0 3.65e-01 100.0% 9.7%
4467333 331.1.1.1 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.77 66.0 4.95e-01 100.0% 58.9%
None 0.76 64.0 3.60e-01 100.0% 8.9%
4225707 2002.1.1.30 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.76 64.0 3.71e-01 100.0% 22.0%
5061905 331.1.1.1 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.75 63.0 5.03e-01 100.0% 72.5%
4055607 244.1.1.4 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › DAO 0.75 62.0 4.17e-01 100.0% 24.5%
1503942 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.75 61.0 5.37e-01 97.3% 100.0%
3289652 2003.1.3.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.74 59.0 3.39e-01 100.0% 8.8%
3176896 270.1.1.2 beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related › Formyl_trans_C 0.74 61.0 4.33e-01 100.0% 32.8%
5033458 331.1.1.1 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.74 62.0 4.77e-01 100.0% 62.2%
3396843 391.1.2.3 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › SVWC 0.73 60.0 4.69e-01 100.0% 53.9%
3403199 331.1.1.1 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › TBP 0.72 61.0 4.45e-01 100.0% 52.7%
3838220 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.71 58.0 4.03e-01 100.0% 26.4%
4062529 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.71 59.0 4.57e-01 100.0% 42.2%
4963300 2003.1.3.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.71 54.0 3.14e-01 100.0% 8.8%
3656952 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 59.0 4.23e-01 100.0% 64.3%
3225870 2002.1.1.30 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 0.70 57.0 3.35e-01 100.0% 28.9%
3970174 2003.1.3.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain 0.70 57.0 3.27e-01 100.0% 9.2%
5024359 12.1.1.3 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Alpha-amylase_C 0.68 52.0 4.29e-01 100.0% 43.8%
1270095 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.65 54.0 4.20e-01 100.0% 40.7%
6502 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.65 51.0 4.51e-01 97.3% 100.0%
3905172 3249.1.1.1 beta sandwiches › beta-sandwich domain in YqeH GTPase › beta-sandwich domain in YqeH GTPase › beta-sandwich domain in YqeH GTPase › YqeH-like_C 0.64 44.0 2.86e-01 73.0% 66.3%
1685099 1.1.7.51 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › NeqB_N 0.64 50.0 4.54e-01 100.0% 62.7%
5008211 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.64 51.0 3.88e-01 100.0% 35.2%
5018772 304.55.2.0 a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like 0.63 51.0 3.97e-01 100.0% 42.1%
3929196 11.1.1.99 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set 0.63 50.0 3.75e-01 100.0% 51.8%
3225850 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.63 52.0 4.81e-01 97.3% 100.0%
5024892 5.1.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed 0.63 54.0 3.45e-01 100.0% 19.5%
3281007 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 53.0 3.52e-01 100.0% 51.3%
3189018 898.1.1.1 a+b two layers › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › Ribosomal_L1 0.60 44.0 3.19e-01 100.0% 28.7%
5010225 2003.1.3.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.59 44.0 2.67e-01 100.0% 10.0%
2546596 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.59 42.0 3.65e-01 86.5% 44.4%
3266831 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 47.0 3.58e-01 100.0% 67.4%
3248628 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.56 46.0 2.72e-01 100.0% 96.2%
4934848 898.1.1.1 a+b two layers › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › Ribosomal_L1 0.53 42.0 3.24e-01 100.0% 36.5%
2100983 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.52 39.0 3.23e-01 100.0% 40.4%
2061904 221.4.1.0 a+b two layers › beta-Grasp › Nudix › Nudix 0.52 37.0 2.52e-01 83.8% 47.3%