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NC_047764.1__YP_009786076.1__HOR15_gp20__00069

Bact-Vir

NC_047764.1__YP_009786076.1__HOR15_gp20__00069

Identity

Accession:
NC_047764 ↗
Kingdom:
phage

Quality

78.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-78
PDB
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3mczA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.70 54.0 3.72e-01 82.4% 75.6%
1x60A01 3.30.70.1070 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sporulation related repeat 0.66 44.0 4.52e-01 74.3% 70.8%
1x19A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.66 50.0 3.89e-01 81.1% 98.1%
1b24A01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.64 45.0 4.22e-01 74.3% 68.4%
3c3pA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.64 49.0 3.65e-01 83.8% 97.5%
2nwuB01 3.30.1440.10 Alpha Beta › 2-Layer Sandwich › 50s Ribosomal Protein L5; Chain: A, › Ribosomal protein L5 0.64 46.0 3.86e-01 75.7% 84.9%
2c43A01 3.90.470.20 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain 0.62 42.0 3.39e-01 70.3% 74.8%
5mmjh01 3.30.1370.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.62 42.0 4.20e-01 75.7% 68.0%
3douA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.61 46.0 3.54e-01 82.4% 96.0%
1z1dB00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.60 46.0 3.89e-01 85.1% 93.1%
2ln3A00 3.30.110.140 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › 0.59 42.0 4.09e-01 75.7% 88.0%
2p25A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.59 39.0 3.29e-01 71.6% 42.0%
2qsrA01 3.90.1150.50 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription-repair-coupling factor, D7 domain 0.58 40.0 3.21e-01 75.7% 34.8%
2kl8A00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.58 42.0 4.07e-01 78.4% 97.6%
2f1fA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.57 41.0 4.10e-01 77.0% 96.2%
4i68A00 3.30.70.1800 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 39.0 3.69e-01 71.6% 57.8%
4nohA01 3.30.70.3060 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 39.0 4.03e-01 71.6% 95.8%
3tm4A01 3.30.2130.30 Alpha Beta › 2-Layer Sandwich › VC0802-like › 0.57 42.0 3.16e-01 78.4% 61.4%
1rzmA01 3.30.70.1140 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phospho-2-dehydro-3-deoxyheptonate aldolase; domain 1 0.57 39.0 3.82e-01 70.3% 85.0%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.57 41.0 3.27e-01 79.7% 67.1%
1htwA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 40.0 3.16e-01 74.3% 51.3%
1f0xA04 3.30.1370.20 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › D-lactate dehydrogenase, cap domain, subdomain 2 0.56 43.0 4.13e-01 83.8% 82.4%
1dq3A04 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.56 42.0 3.70e-01 81.1% 70.2%
4fpvB00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.56 41.0 2.86e-01 78.4% 83.3%
2gukA00 3.30.2190.10 Alpha Beta › 2-Layer Sandwich › PG1857-like › PG1857-like 0.56 41.0 3.58e-01 77.0% 71.2%
7qh2C03 3.30.70.2740 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 38.0 3.79e-01 71.6% 69.2%
1i94H01 3.30.1370.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.55 39.0 3.91e-01 81.1% 71.8%
1yk3B00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 40.0 3.08e-01 79.7% 95.3%
5gt8D02 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.55 41.0 3.53e-01 81.1% 73.0%
3l8dA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 39.0 3.00e-01 78.4% 98.5%
7jrjK01 3.30.70.141 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleoside diphosphate kinase-like domain 0.54 39.0 3.13e-01 77.0% 78.2%
3lmmA01 3.30.950.30 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Schlafen, AAA domain 0.54 46.0 3.74e-01 98.6% 92.1%
4ldgA00 2.170.270.10 Mainly Beta › Beta Complex › Beta-clip-like › SET domain 0.54 42.0 3.05e-01 85.1% 40.3%
2xdhA00 2.60.40.680 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 39.0 3.24e-01 77.0% 60.9%
1zhvA00 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.54 45.0 3.72e-01 91.9% 76.1%
2avdA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.54 39.0 2.91e-01 79.7% 98.2%
3akjA01 3.30.200.120 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.54 44.0 4.43e-01 93.2% 97.3%
7yh1A01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.54 40.0 3.59e-01 83.8% 84.2%
2rb9A02 3.90.650.10 Alpha Beta › Alpha-Beta Complex › Phosphoribosyl-aminoimidazole Synthetase; Chain A, domain 2 › PurM-like C-terminal domain 0.53 42.0 3.29e-01 89.2% 62.4%
2hnkA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 39.0 2.88e-01 81.1% 82.1%
6ofsA03 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.53 41.0 3.07e-01 87.8% 86.5%
2phcB01 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.53 40.0 3.90e-01 85.1% 74.7%
1w63Q00 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 38.0 3.05e-01 77.0% 84.5%
4pg4B03 3.30.70.3100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 36.0 3.66e-01 73.0% 94.7%
2hf6A00 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 38.0 3.03e-01 77.0% 83.9%
3ehgA00 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.52 38.0 3.32e-01 81.1% 52.8%
1ifqB00 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.52 38.0 3.14e-01 77.0% 99.2%
3dr5A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 38.0 2.79e-01 79.7% 81.5%
3v8hC00 3.30.572.10 Alpha Beta › 2-Layer Sandwich › Thymidylate Synthase; Chain A › Thymidylate synthase/dCMP hydroxymethylase domain 0.51 38.0 2.62e-01 81.1% 30.9%
4ae5C00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 42.0 3.40e-01 95.9% 99.4%
1lfwA03 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 39.0 3.82e-01 93.2% 76.1%
3n89A02 3.30.310.210 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.50 37.0 3.09e-01 79.7% 100.0%
1skoB00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.50 37.0 3.33e-01 82.4% 81.0%
2hqyA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.50 36.0 3.11e-01 78.4% 70.0%
8b6jb01 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.50 38.0 2.93e-01 86.5% 88.8%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5037660 6115.1.1.0 a+b three layers › AF1514-like › AF1514-like › AF1514-like 0.72 54.0 5.45e-01 79.7% 93.3%
5003842 2003.1.5.66 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 0.65 50.0 3.81e-01 83.8% 90.5%
3976762 304.14.1.1 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.65 46.0 4.60e-01 78.4% 72.0%
None 0.65 49.0 3.55e-01 82.4% 79.1%
3452826 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.64 44.0 3.64e-01 75.7% 40.0%
4171345 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.64 44.0 4.11e-01 77.0% 56.8%
3972855 304.14.1.1 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.63 43.0 4.37e-01 78.4% 70.7%
4932448 304.28.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.63 44.0 4.15e-01 73.0% 96.7%
4265078 304.14.1.0 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) 0.63 43.0 4.29e-01 70.3% 73.3%
4297519 304.14.1.1 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.62 44.0 4.49e-01 75.7% 77.0%
1211839 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.62 44.0 4.06e-01 74.3% 67.7%
3386674 304.14.1.1 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.61 45.0 4.56e-01 97.3% 78.7%
3247165 390.1.1.0 few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like 0.60 44.0 4.14e-01 93.2% 63.3%
3963926 304.14.1.1 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.60 42.0 4.13e-01 74.3% 68.4%
4201421 3156.3.1.0 beta sandwiches › Cupredoxin-like › Surface antigen 1 (SAG1)-related-sequence (SRS) family › Surface antigen 1 (SAG1)-related-sequence (SRS) family 0.60 43.0 3.55e-01 75.7% 94.1%
4999682 304.5.1.0 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.58 41.0 4.10e-01 73.0% 96.0%
4217761 304.14.1.1 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.58 42.0 4.18e-01 78.4% 89.9%
3387138 304.110.1.0 a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like 0.57 40.0 4.02e-01 73.0% 97.3%
5066413 304.126.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C 0.57 43.0 4.24e-01 86.5% 76.2%
3385766 304.28.1.2 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › Sec_GG 0.57 44.0 4.18e-01 85.1% 98.9%
4379250 304.28.1.2 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › Sec_GG 0.56 38.0 3.84e-01 70.3% 70.7%
4668421 304.162.1.1 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH 0.56 38.0 3.80e-01 71.6% 67.5%
3972097 304.14.1.0 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) 0.56 40.0 4.07e-01 79.7% 76.0%
3478583 390.1.1.4 few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › MANEC 0.56 42.0 4.04e-01 89.2% 70.6%
3988220 4354.1.1.1 a+b two layers › TRCF domain › TRCF domain › TRCF domain › TRCF 0.56 41.0 3.25e-01 86.5% 35.4%
4282418 304.126.1.0 a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C 0.56 39.0 3.99e-01 73.0% 78.6%
4988168 304.15.1.0 a+b two layers › Alpha-beta plaits › Viral DNA-binding domain › Viral DNA-binding domain 0.56 34.0 3.69e-01 70.3% 75.0%
5049234 2.1.1.374 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF2110_C 0.55 46.0 3.67e-01 97.3% 94.5%
3971738 304.8.1.102 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_3, ACT_7 0.55 40.0 3.44e-01 79.7% 61.7%
4529236 207.11.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD 0.55 40.0 2.86e-01 82.4% 28.9%
4411246 304.162.1.1 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH 0.54 39.0 3.84e-01 78.4% 71.2%
None 0.54 37.0 2.24e-01 73.0% 13.2%
4996402 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.54 41.0 3.88e-01 86.5% 66.3%
1756172 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.54 43.0 3.30e-01 89.2% 89.7%
4989805 328.5.1.0 a+b two layers › IF3-like › SirA-like › SirA-like 0.54 39.0 4.03e-01 78.4% 100.0%
3597359 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 39.0 3.11e-01 77.0% 82.7%
3777156 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 38.0 3.18e-01 79.7% 72.7%
3886048 223.2.1.3 a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s 0.53 39.0 3.05e-01 77.0% 81.2%
4124687 304.162.1.1 a+b two layers › Alpha-beta plaits › Competence or damage-inducible protein CinA middle domain › Competence or damage-inducible protein CinA middle domain › CinA_KH 0.53 37.0 3.71e-01 78.4% 73.3%
4027565 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.52 38.0 2.99e-01 77.0% 91.0%
5046695 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.52 37.0 3.69e-01 77.0% 91.3%
5059379 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.52 36.0 3.66e-01 73.0% 98.6%
5059197 304.55.2.1 a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like › Y1_Tnp 0.52 36.0 2.99e-01 73.0% 42.9%
4385553 304.48.1.48 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GGDEF_2 0.52 43.0 3.38e-01 94.6% 73.9%
4289242 327.19.1.0 a+b two layers › Alpha-lytic protease prodomain-like › DNA mismatch repair protein MutL regulatory subdomain › DNA mismatch repair protein MutL regulatory subdomain 0.52 33.0 3.27e-01 73.0% 60.0%
4980097 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 37.0 3.08e-01 75.7% 99.2%
3737984 304.120.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.51 37.0 3.44e-01 78.4% 58.0%
3960456 246.3.1.0 a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like 0.51 36.0 2.58e-01 77.0% 80.8%
3490881 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.50 37.0 3.20e-01 79.7% 74.2%