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NC_047767.1__YP_009786172.1__HOR18_gp018__00018

Bact-Vir

NC_047767.1__YP_009786172.1__HOR18_gp018__00018

Identity

Accession:
NC_047767 ↗
Kingdom:
phage

Quality

73.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Sciuriunavirus› Staphylococcus_phage_vB_SscM-1

TaxID: 1868844

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-94
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6ruiB04 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.68 59.0 4.67e-01 94.4% 96.7%
7ob9B01 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.67 59.0 4.56e-01 95.6% 90.1%
5tkyA04 2.60.34.10 Mainly Beta › Sandwich › Substrate Binding Domain Of DNAk; Chain A, domain 1 › Substrate Binding Domain Of DNAk; Chain A, domain 1 0.63 47.0 4.32e-01 78.9% 90.5%
4agiA00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.61 47.0 3.23e-01 83.3% 65.0%
4g59B00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.60 47.0 3.93e-01 85.6% 81.0%
1lqvB00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.60 47.0 3.85e-01 85.6% 83.2%
6htnA01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.59 46.0 3.99e-01 83.3% 79.6%
1vkdA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.59 45.0 3.18e-01 85.6% 80.1%
1ye9A02 2.40.470.10 Mainly Beta › Beta Barrel › catalase hpii fold › catalase hpii domain 0.58 41.0 3.80e-01 73.3% 83.0%
5c2vB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 44.0 3.00e-01 84.4% 87.5%
1rypL00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.55 48.0 3.70e-01 98.9% 87.7%
2oktA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.55 39.0 3.50e-01 74.4% 94.5%
2g30A02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.52 42.0 3.89e-01 90.0% 100.0%
3we5A00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.50 41.0 3.53e-01 87.8% 63.8%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3965232 897.2.1.2 ↗ a+b two layers › Acidic mitochondrial matrix protein p32-like › Protein E › Protein E › CNP1 0.70 51.0 4.39e-01 76.7% 61.4%
3799398 241.4.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 › GSKIP_dom 0.62 42.0 3.41e-01 70.0% 66.7%
3320258 5.1.5.66 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FBA_1 0.61 51.0 3.44e-01 88.9% 94.4%
3393084 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.60 46.0 4.83e-01 92.2% 91.3%
4103142 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.59 47.0 4.90e-01 100.0% 97.5%
3829668 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.59 44.0 2.52e-01 77.8% 14.5%
3730190 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.59 41.0 3.65e-01 73.3% 96.9%
4371230 2004.1.1.615 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21, AAA_23, AAA_29 0.59 43.0 2.57e-01 77.8% 12.9%
5013525 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.59 40.0 3.60e-01 71.1% 67.2%
3671149 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.57 45.0 3.04e-01 87.8% 83.3%
3215978 7525.1.1.2 ↗ a/b three-layered sandwiches › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › Phosphoglycerate mutase-like › His_Phos_2 0.57 45.0 2.92e-01 85.6% 24.8%
3822639 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.57 45.0 3.08e-01 86.7% 79.1%
4940099 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.56 42.0 2.78e-01 78.9% 19.3%
4500042 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.56 45.0 2.90e-01 90.0% 30.6%
4991900 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.55 41.0 2.70e-01 77.8% 19.0%
3777742 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.55 45.0 2.98e-01 90.0% 36.0%
3891230 5.1.5.43 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WDR93 0.55 45.0 2.82e-01 88.9% 80.8%
3871823 2004.1.1.433 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 0.55 45.0 2.82e-01 90.0% 28.2%
5036758 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.55 48.0 3.39e-01 96.7% 96.1%
4231809 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.55 40.0 2.55e-01 77.8% 14.7%
5047049 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.55 40.0 2.46e-01 78.9% 12.9%
3220436 241.4.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 › GSKIP_dom 0.55 42.0 3.37e-01 80.0% 70.5%
3233672 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.54 42.0 4.12e-01 86.7% 85.0%
4177861 243.1.1.66 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TcaA_5th 0.53 37.0 3.44e-01 73.3% 90.0%
4679975 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.53 40.0 2.66e-01 80.0% 27.9%
5030457 5090.1.1.0 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.53 44.0 4.21e-01 95.6% 88.2%
4374392 2004.1.1.429 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_15 0.52 38.0 2.55e-01 78.9% 18.4%
5051418 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.51 45.0 3.97e-01 100.0% 86.7%
3626566 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.51 39.0 3.65e-01 83.3% 80.9%
3711119 331.9.1.0 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.50 38.0 3.61e-01 84.4% 100.0%