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NC_047767.1__YP_009786214.1__HOR18_gp060__00060

Bact-Vir

NC_047767.1__YP_009786214.1__HOR18_gp060__00060

Identity

Accession:
NC_047767 ↗
Kingdom:
phage

Quality

89.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 2-53
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01476.27 best LysM 53.0 3.60e-14 80.8% 74.4%
D2 medium residues 55-100
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF01476.27 best LysM 46.1 5.10e-12 93.5% 100.0%
PF23577.2 LysM_RLK 28.0 2.50e-06 93.5% 59.1%
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4b8vA01 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.97 92.0 7.88e-01 100.0% 70.1%
5c8qB02 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.95 87.0 8.71e-01 97.8% 100.0%
4b8vA02 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.89 80.0 6.82e-01 100.0% 67.1%
4b8vA03 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.87 77.0 7.58e-01 100.0% 95.9%
2mkxA00 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.85 75.0 7.32e-01 100.0% 90.2%
2mtzA01 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.82 72.0 7.02e-01 100.0% 92.0%
2djpA00 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.82 72.0 6.08e-01 100.0% 61.0%
1e0gA00 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.81 70.0 6.99e-01 100.0% 93.8%
4b43A01 1.10.10.2480 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.75 57.0 5.13e-01 87.0% 77.9%
2gu1A01 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.74 66.0 5.29e-01 100.0% 58.0%
2x3eA01 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.69 51.0 3.45e-01 80.4% 81.3%
3lsgA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.69 54.0 5.19e-01 89.1% 98.2%
4ijaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 54.0 4.90e-01 89.1% 95.2%
1s3jA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 52.0 4.81e-01 89.1% 96.9%
1s6lA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 52.0 5.06e-01 87.0% 96.2%
6xiuA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.67 54.0 4.21e-01 89.1% 51.5%
1qbjC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 52.0 4.68e-01 89.1% 92.4%
1r1uB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 53.0 4.24e-01 91.3% 61.3%
1ulyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 52.0 4.27e-01 89.1% 70.8%
4o5vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 52.0 4.60e-01 91.3% 88.7%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 52.0 4.12e-01 91.3% 65.0%
2vxzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 50.0 4.57e-01 89.1% 92.4%
1r8eA02 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.65 51.0 4.42e-01 87.0% 74.0%
2oerA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.64 52.0 3.53e-01 93.5% 25.7%
3gw2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 50.0 4.09e-01 91.3% 66.7%
6uvuA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 50.0 3.99e-01 91.3% 60.6%
3edpA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 48.0 4.21e-01 89.1% 78.9%
3sluB01 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 51.0 4.23e-01 100.0% 56.0%
7pzaA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 49.0 4.08e-01 91.3% 77.9%
3dv8A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 48.0 4.21e-01 93.5% 85.9%
2h6bA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 52.0 4.18e-01 100.0% 87.5%
4dq5B00 1.10.530.50 Mainly Alpha › Orthogonal Bundle › Lysozyme › Peptidase U40 0.60 44.0 3.10e-01 80.4% 51.2%
1u3eM02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 45.0 3.99e-01 82.6% 70.6%
2j3lA03 3.90.960.10 Alpha Beta › Alpha-Beta Complex › YbaK protein › YbaK/aminoacyl-tRNA synthetase-associated domain 0.55 47.0 3.41e-01 100.0% 80.3%
ECOD (99)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3969916 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 1.00 95.0 7.99e-01 100.0% 65.7%
4249176 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 1.00 95.0 8.49e-01 100.0% 76.7%
3452845 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 1.00 95.0 8.81e-01 100.0% 83.6%
3974521 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.99 95.0 8.46e-01 100.0% 76.7%
4448562 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.99 91.0 8.41e-01 95.7% 80.0%
3655335 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.99 95.0 6.13e-01 100.0% 27.9%
3464064 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.99 94.0 7.35e-01 100.0% 54.1%
3501971 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.99 94.0 8.40e-01 100.0% 76.7%
3963287 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.99 82.0 8.76e-01 87.0% 100.0%
3165071 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.99 94.0 8.70e-01 100.0% 85.5%
4680476 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.99 94.0 7.87e-01 100.0% 67.1%
4205026 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.98 93.0 8.08e-01 100.0% 70.8%
3381619 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.98 93.0 5.43e-01 100.0% 15.7%
3458171 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.98 93.0 8.05e-01 100.0% 72.3%
3337328 101.15.1.14 alpha arrays › HTH › LysM domain › LysM domain › LysM, LysM2_CERK1_LYK3_4_5 0.98 92.0 5.43e-01 100.0% 16.2%
2035755 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.97 92.0 6.88e-01 100.0% 46.5%
2124476 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.97 92.0 6.27e-01 100.0% 34.8%
2124917 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.97 91.0 5.99e-01 100.0% 29.2%
3670445 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.97 92.0 5.33e-01 100.0% 15.5%
4461167 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.97 92.0 7.96e-01 100.0% 70.8%
4404011 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.97 91.0 7.71e-01 100.0% 67.1%
3985839 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.97 92.0 7.74e-01 100.0% 65.7%
3898121 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.97 91.0 8.49e-01 100.0% 83.6%
3417561 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.97 91.0 5.35e-01 100.0% 15.9%
3337080 101.15.1.5 alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 0.97 91.0 8.17e-01 100.0% 78.3%
3426433 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.97 90.0 8.14e-01 100.0% 78.3%
2047861 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.97 90.0 8.23e-01 100.0% 81.0%
3324708 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.96 90.0 8.08e-01 100.0% 78.3%
3303205 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.96 90.0 8.10e-01 100.0% 81.7%
4157099 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.96 88.0 8.72e-01 97.8% 95.8%
4277578 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.95 89.0 8.60e-01 100.0% 94.0%
3349612 101.15.1.5 alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 0.95 87.0 8.43e-01 100.0% 90.0%
4118675 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.94 85.0 8.67e-01 97.8% 100.0%
3165082 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.94 88.0 8.51e-01 100.0% 94.0%
3413357 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.94 88.0 7.45e-01 100.0% 67.1%
1758716 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.94 87.0 8.33e-01 100.0% 90.4%
3903953 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.94 85.0 8.23e-01 100.0% 90.0%
3821115 101.15.1.5 alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 0.94 86.0 6.84e-01 100.0% 56.5%
3981327 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.94 87.0 8.17e-01 100.0% 87.0%
2074716 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.93 87.0 8.40e-01 100.0% 92.2%
3925474 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.93 87.0 8.48e-01 100.0% 94.0%
3456918 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.93 87.0 6.54e-01 100.0% 47.0%
3190144 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.93 85.0 8.32e-01 100.0% 95.9%
3517460 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.93 86.0 8.05e-01 100.0% 85.5%
3846469 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.93 86.0 6.69e-01 100.0% 52.2%
3641672 101.15.1.5 alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 0.92 85.0 7.08e-01 100.0% 62.7%
3367888 101.15.1.5 alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 0.92 84.0 7.23e-01 100.0% 74.3%
3230171 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.92 86.0 8.34e-01 100.0% 94.0%
3320955 101.15.1.5 alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 0.92 85.0 7.43e-01 100.0% 72.3%
4379136 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.92 85.0 6.14e-01 100.0% 42.6%
3232962 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.92 85.0 7.67e-01 100.0% 78.3%
3331840 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.92 86.0 7.99e-01 100.0% 85.5%
3964929 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.92 81.0 8.20e-01 95.7% 97.8%
4216124 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.92 81.0 8.18e-01 95.7% 100.0%
3636417 101.15.1.0 alpha arrays › HTH › LysM domain › LysM domain 0.92 84.0 7.95e-01 100.0% 92.5%
4137479 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.91 84.0 6.69e-01 100.0% 55.3%
3964920 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.91 82.0 7.54e-01 100.0% 77.6%
3810505 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.91 83.0 5.49e-01 100.0% 28.5%
3250641 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.91 83.0 8.07e-01 100.0% 92.0%
3338947 101.15.1.0 alpha arrays › HTH › LysM domain › LysM domain 0.91 83.0 7.31e-01 100.0% 73.8%
4023232 101.15.1.0 alpha arrays › HTH › LysM domain › LysM domain 0.91 83.0 7.50e-01 100.0% 81.7%
3675929 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.90 84.0 7.88e-01 100.0% 83.6%
3691772 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.90 83.0 7.77e-01 100.0% 85.5%
3636424 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.90 82.0 7.71e-01 100.0% 89.1%
3190345 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.90 83.0 7.75e-01 100.0% 87.3%
4149501 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.90 83.0 8.08e-01 100.0% 94.0%
3413453 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.90 83.0 8.05e-01 100.0% 94.0%
3250125 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.90 83.0 7.27e-01 100.0% 75.4%
4468802 101.15.1.0 alpha arrays › HTH › LysM domain › LysM domain 0.90 82.0 6.73e-01 100.0% 59.5%
4047213 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.90 80.0 7.55e-01 100.0% 94.5%
3691758 101.15.1.0 alpha arrays › HTH › LysM domain › LysM domain 0.90 83.0 7.73e-01 100.0% 89.1%
3234671 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.90 81.0 7.65e-01 100.0% 85.5%
3185732 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.89 80.0 7.54e-01 100.0% 96.4%
3191020 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.89 80.0 7.31e-01 100.0% 85.0%
3248434 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.89 80.0 7.85e-01 100.0% 100.0%
4491522 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.89 79.0 7.25e-01 100.0% 78.3%
4662825 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.89 80.0 7.07e-01 100.0% 75.4%
1759182 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.88 79.0 7.66e-01 100.0% 92.2%
4022922 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.88 80.0 7.51e-01 100.0% 85.5%
4492966 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.88 79.0 7.49e-01 100.0% 85.5%
3989756 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.88 76.0 7.51e-01 95.7% 100.0%
3181142 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.88 75.0 7.33e-01 93.5% 98.0%
3306283 101.15.1.8 alpha arrays › HTH › LysM domain › LysM domain › LysM3_NFP 0.88 79.0 6.98e-01 100.0% 72.3%
3247196 101.15.1.0 alpha arrays › HTH › LysM domain › LysM domain 0.87 79.0 7.17e-01 100.0% 78.3%
3711427 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.87 77.0 6.68e-01 100.0% 65.2%
3720958 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.87 78.0 7.61e-01 100.0% 94.0%
2042916 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.87 77.0 7.32e-01 100.0% 87.0%
3182365 101.15.1.0 alpha arrays › HTH › LysM domain › LysM domain 0.87 77.0 7.36e-01 100.0% 88.7%
4128043 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.86 74.0 7.54e-01 95.7% 100.0%
3598919 101.15.1.0 alpha arrays › HTH › LysM domain › LysM domain 0.86 76.0 4.69e-01 100.0% 18.8%
3604763 101.15.1.0 alpha arrays › HTH › LysM domain › LysM domain 0.86 75.0 6.10e-01 100.0% 52.9%
3186054 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.86 78.0 7.58e-01 100.0% 92.0%
3240624 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.85 75.0 7.13e-01 100.0% 85.5%
3698670 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.85 75.0 6.84e-01 100.0% 75.0%
3240632 101.15.1.1 alpha arrays › HTH › LysM domain › LysM domain › LysM 0.84 71.0 7.17e-01 97.8% 95.6%
2644066 101.15.1.7 alpha arrays › HTH › LysM domain › LysM domain › LysM_RLK 0.82 71.0 6.02e-01 100.0% 59.2%
4460243 101.1.9.8 alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.75 58.0 5.56e-01 87.0% 96.4%
4886263 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.72 56.0 5.34e-01 87.0% 98.2%
2892669 101.1.9.8 alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.69 56.0 4.65e-01 93.5% 60.2%