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NC_047767.1__YP_009786267.1__HOR18_gp113__00113

Bact-Vir

NC_047767.1__YP_009786267.1__HOR18_gp113__00113

Identity

Accession:
NC_047767 ↗
Kingdom:
phage

Quality

77.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 27-114
PDB
D2 medium residues 122-194
PDB
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4rs6A01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.62 48.0 4.03e-01 82.2% 59.3%
4by2B00 2.60.450.20 Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › 0.58 45.0 3.50e-01 82.2% 54.8%
1lqlA01 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.58 26.0 3.23e-01 86.3% 100.0%
3p34A02 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.56 45.0 4.07e-01 86.3% 64.9%
4g59B00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.55 48.0 3.78e-01 100.0% 82.2%
6qp9B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 45.0 2.84e-01 97.3% 88.3%
2mdiA00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.53 27.0 2.98e-01 86.3% 57.1%
4ci8A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 44.0 2.96e-01 95.9% 59.4%
5flwA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.52 44.0 3.01e-01 100.0% 87.4%
3c5mA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 42.0 2.77e-01 95.9% 66.2%
4fr9A00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 44.0 3.62e-01 98.6% 76.6%
4dsdA00 3.40.1420.30 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › 0.51 42.0 3.52e-01 90.4% 73.8%
2g30A02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.51 39.0 3.47e-01 86.3% 95.7%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3616330 77.3.1.4 beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › PF28998 0.73 50.0 4.06e-01 71.2% 55.6%
5074928 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.65 43.0 4.54e-01 86.3% 76.9%
3471142 77.3.1.0 beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain 0.62 47.0 3.44e-01 80.8% 43.7%
3272708 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.61 47.0 4.56e-01 82.2% 80.0%
3717674 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.60 46.0 4.30e-01 82.2% 72.2%
3764875 77.3.1.1 beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › Tcp10_C 0.59 46.0 3.38e-01 82.2% 47.4%
3504473 77.3.1.0 beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain 0.58 44.0 3.30e-01 82.2% 46.1%
3711004 77.3.1.1 beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › Tcp10_C 0.58 45.0 3.75e-01 83.6% 85.6%
3966231 3523.1.1.1 beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › LptF_LptG 0.57 44.0 3.85e-01 82.2% 78.2%
3374197 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 41.0 2.33e-01 79.5% 14.8%
3774338 292.2.1.6 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › DUF4520 0.56 44.0 3.88e-01 86.3% 69.1%
3715045 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.55 40.0 4.11e-01 100.0% 82.9%
3565087 6129.1.1.1 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.54 46.0 3.52e-01 100.0% 62.2%
3802000 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.53 46.0 2.85e-01 97.3% 41.7%
4981525 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.53 36.0 3.61e-01 98.6% 67.1%
3739666 247.1.1.38 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C 0.53 39.0 3.68e-01 82.2% 64.4%
3601838 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 38.0 2.37e-01 78.1% 96.6%
1677788 292.2.1.1 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.52 40.0 3.81e-01 83.6% 76.1%
4346967 331.2.1.8 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › CPSF73-100_C 0.52 38.0 3.59e-01 82.2% 64.4%
3163656 7515.1.1.2 a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase 0.51 40.0 2.63e-01 84.9% 26.4%
3407414 5.1.4.269 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, HELP, Beta-prop_EML 0.51 42.0 2.86e-01 95.9% 72.2%
3247601 5.1.3.25 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Mcl1_mid 0.51 42.0 2.81e-01 97.3% 78.8%
D3 medium residues 212-315
PDB
D4 medium residues 436-459_622-782
PDB
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2dyiA02 2.30.30.240 Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain 0.63 25.0 3.86e-01 84.9% 93.0%
1sqjB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 42.0 3.12e-01 72.4% 94.4%
6qp7A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 41.0 3.05e-01 76.8% 75.6%
6nobA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 41.0 3.27e-01 82.2% 99.2%
2l3rA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.51 22.0 3.19e-01 80.0% 94.5%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5057420 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.56 41.0 3.44e-01 74.1% 100.0%
3110491 5.1.3.3 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Neur 0.56 43.0 3.39e-01 80.0% 95.4%
3701230 5.1.3.28 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.55 43.0 3.30e-01 81.6% 78.4%
3875841 5.1.4.619 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF27600, PF27601 0.55 42.0 2.73e-01 80.0% 40.5%
3681461 5.1.3.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.53 38.0 3.00e-01 73.5% 92.9%
3318130 9.2.1.4 beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › DUF2921_N 0.50 30.0 3.24e-01 81.1% 68.4%
D5 medium residues 783-860
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ffsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.71 49.0 3.99e-01 98.7% 38.6%
2q1fA04 2.60.220.10 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › Polysaccharide lyase family 8-like, C-terminal 0.71 49.0 3.97e-01 71.8% 91.7%
4hwmA00 2.40.128.500 Mainly Beta › Beta Barrel › Lipocalin › YedD-like protein 0.71 54.0 4.72e-01 88.5% 54.7%
2zylA02 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.70 60.0 4.28e-01 92.3% 47.5%
5e1qB01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.69 54.0 3.58e-01 82.1% 70.9%
1celA00 2.70.100.10 Mainly Beta › Distorted Sandwich › 1,4-Beta-D-Glucan Cellobiohydrolase I; Chain A › Glycoside hydrolase, family 7, domain 0.68 51.0 3.19e-01 80.8% 49.7%
3s6pA03 2.60.270.70 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › 0.67 59.0 4.83e-01 97.4% 88.0%
2ci9B00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.67 46.0 4.25e-01 78.2% 56.0%
3wjcA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.67 54.0 4.30e-01 87.2% 48.4%
2gsbA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.67 47.0 4.61e-01 79.5% 67.9%
2oq1A03 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.67 48.0 4.36e-01 79.5% 58.0%
3u7vA02 2.60.220.20 Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › putative beta-Galactosidase from caulobacter crescentus 0.67 48.0 3.92e-01 75.6% 91.7%
4i8oA02 3.30.160.690 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Bacterial toxin RNase RnlA/LsoA, N repeated domain 0.66 46.0 4.44e-01 97.4% 63.3%
1h91A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.65 54.0 4.14e-01 91.0% 43.3%
7szeB02 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.65 58.0 4.34e-01 97.4% 55.4%
4id2A00 2.40.128.510 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4738 0.64 52.0 4.35e-01 88.5% 86.0%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.64 46.0 4.29e-01 88.5% 60.0%
1d4tA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.63 46.0 4.14e-01 80.8% 56.7%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 50.0 4.24e-01 84.6% 56.7%
3doaA01 2.30.310.10 Mainly Beta › Roll › ibrinogen binding protein from staphylococcus aureus fold › ibrinogen binding protein from staphylococcus aureus domain 0.63 50.0 4.09e-01 88.5% 77.1%
2nvnA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.63 50.0 4.33e-01 97.4% 55.8%
2hx0A01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.63 49.0 4.13e-01 84.6% 62.1%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 40.0 4.54e-01 87.2% 91.2%
1vyfA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 55.0 4.55e-01 98.7% 60.7%
3ovcA01 3.30.200.150 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.61 45.0 4.75e-01 100.0% 85.9%
1s2kA00 2.60.120.700 Mainly Beta › Sandwich › Jelly Rolls › Peptidase G1 0.61 52.0 3.85e-01 93.6% 56.8%
5iz3A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.59 51.0 4.02e-01 100.0% 74.7%
3v89A02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.59 48.0 2.84e-01 88.5% 20.6%
8ainB01 3.10.450.250 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › S. aureus uracil DNA glycosylase inhibitor 0.58 44.0 4.00e-01 80.8% 61.0%
4xrtA02 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 50.0 3.97e-01 96.2% 56.2%
7cu8E01 3.40.1000.70 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › PknH-like extracellular domain 0.57 49.0 3.83e-01 100.0% 72.0%
3w9kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 48.0 4.01e-01 94.9% 61.5%
1mpgA01 3.30.310.20 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain 0.55 39.0 3.50e-01 96.2% 51.8%
1jmxA02 2.40.128.120 Mainly Beta › Beta Barrel › Lipocalin › Quinohemoprotein amine dehydrogenase alpha subunit, domain 2 0.55 49.0 4.45e-01 100.0% 75.2%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.55 40.0 4.19e-01 85.9% 89.6%
1iwmA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.55 47.0 3.57e-01 93.6% 41.8%
1wueB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 41.0 3.31e-01 80.8% 83.9%
4agiA00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.54 47.0 3.19e-01 100.0% 32.5%
6htnA01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.54 43.0 3.70e-01 92.3% 63.5%
3qf7A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 47.0 3.16e-01 100.0% 25.9%
2pmqA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 39.0 3.35e-01 78.2% 89.1%
2w18A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 47.0 3.17e-01 100.0% 28.1%
1dxkA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.52 45.0 3.32e-01 100.0% 60.2%
2x8fA02 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.52 36.0 3.44e-01 89.7% 61.1%
3n91A02 2.40.128.420 Mainly Beta › Beta Barrel › Lipocalin › 0.51 44.0 3.76e-01 100.0% 57.4%
3dasA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.51 43.0 2.91e-01 100.0% 38.0%
4kc7A02 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.50 45.0 4.18e-01 100.0% 80.8%
1nycA00 2.40.310.10 Mainly Beta › Beta Barrel › Staphostatins › beta-Barrel protease inhibitors 0.50 44.0 3.96e-01 98.7% 77.5%
ECOD (45)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5015593 3111.1.1.0 beta barrels › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain › STT3/PglB/AglB beta-barrel domain 0.82 55.0 4.68e-01 82.1% 45.0%
3943357 274.1.1.35 a+b two layers › Pili subunits › Pili subunits › Pili subunits › DUF2509 0.75 55.0 5.41e-01 98.7% 71.8%
3244229 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.75 51.0 4.32e-01 70.5% 96.0%
3979195 274.1.1.35 a+b two layers › Pili subunits › Pili subunits › Pili subunits › DUF2509 0.73 56.0 4.75e-01 100.0% 50.4%
5023031 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.73 51.0 4.39e-01 74.4% 96.0%
3499821 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.71 49.0 4.12e-01 71.8% 93.8%
4342741 243.19.1.3 a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains › XkdV_N 0.69 56.0 5.52e-01 100.0% 81.2%
3987038 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.69 63.0 5.29e-01 98.7% 64.8%
4254206 12.3.1.22 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › GH97_N 0.69 54.0 3.58e-01 82.1% 71.3%
3241869 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.69 51.0 4.57e-01 91.0% 56.4%
1103 10.1.1.13 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_7 0.68 51.0 3.20e-01 80.8% 49.5%
5004981 3335.1.1.0 beta barrels › Handle domain in transferrin-binding protein B › Handle domain in transferrin-binding protein B › Handle domain in transferrin-binding protein B 0.68 52.0 5.63e-01 88.5% 96.9%
4635523 331.3.1.20 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › KshA_C 0.67 60.0 4.07e-01 94.9% 47.5%
4470525 331.3.1.20 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › KshA_C 0.67 60.0 4.10e-01 94.9% 46.1%
5004346 331.19.1.0 a+b two layers › TBP-like › Toxin RnlA N-terminal domains › Toxin RnlA N-terminal domains 0.67 46.0 4.50e-01 97.4% 65.9%
2755883 331.19.1.1 a+b two layers › TBP-like › Toxin RnlA N-terminal domains › Toxin RnlA N-terminal domains › RnlA_toxin 0.66 46.0 4.37e-01 97.4% 62.0%
4209630 331.3.1.20 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › KshA_C 0.66 57.0 4.13e-01 94.9% 56.2%
3648228 813.1.1.2 a+b two layers › Chalcone isomerase › Chalcone isomerase › Chalcone isomerase › Chalcone_2 0.65 48.0 3.52e-01 78.2% 45.6%
2639646 331.3.1.19 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VanA_C 0.65 58.0 4.25e-01 97.4% 50.0%
3690953 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.65 48.0 4.36e-01 78.2% 97.1%
3487462 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.63 56.0 4.74e-01 98.7% 63.1%
5040587 331.3.1.11 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.63 55.0 4.37e-01 96.2% 58.1%
3716204 220.1.1.11 beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru 0.60 46.0 4.01e-01 80.8% 68.7%
3972685 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.60 52.0 4.17e-01 96.2% 58.0%
3510681 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 45.0 4.64e-01 80.8% 85.3%
3507499 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.59 49.0 4.04e-01 88.5% 88.1%
3240119 243.1.1.75 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26530 0.59 52.0 4.67e-01 94.9% 96.2%
4629424 4041.1.1.1 a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_2 0.59 45.0 3.25e-01 89.7% 27.7%
3286278 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.58 41.0 4.07e-01 73.1% 78.8%
4482319 5.1.11.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › eIF2A 0.57 52.0 3.16e-01 100.0% 19.8%
4368957 274.1.1.13 a+b two layers › Pili subunits › Pili subunits › Pili subunits › GspH 0.57 51.0 4.07e-01 100.0% 87.1%
3619070 331.3.1.5 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.57 48.0 3.85e-01 96.2% 56.4%
3334169 708.1.1.7 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › DBD_Tnp_Mut 0.57 41.0 4.23e-01 96.2% 81.3%
3703463 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.57 50.0 2.76e-01 100.0% 40.6%
3789706 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.56 49.0 3.82e-01 97.4% 54.7%
490 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.56 40.0 4.13e-01 89.7% 82.4%
858 9.3.1.1 beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Qn_am_d_aII 0.55 49.0 4.32e-01 100.0% 68.9%
4978399 210.1.2.4 a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › AAT 0.55 48.0 3.30e-01 94.9% 55.8%
3549354 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 48.0 2.93e-01 100.0% 19.5%
3284940 7579.1.1.0 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.55 49.0 2.88e-01 100.0% 14.6%
1443135 3321.1.1.2 a+b two layers › Meander beta sheet domain in fatty acid synthase subunit beta › Meander beta sheet domain in fatty acid synthase subunit beta › Meander beta sheet domain in fatty acid synthase subunit beta › DNA_pol_B_N 0.55 47.0 4.22e-01 96.2% 83.2%
5003245 243.8.1.0 a+b two layers › Cystatin-like › Uracil-DNA glycosylase inhibitor protein › Uracil-DNA glycosylase inhibitor protein 0.55 38.0 4.02e-01 82.1% 82.9%
5080790 11.1.4.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.51 44.0 4.19e-01 92.3% 87.8%
3554960 5.1.4.169 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.51 45.0 2.99e-01 100.0% 24.2%
1310956 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 45.0 2.97e-01 100.0% 29.4%
D6 medium residues 866-935
PDB
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1o8vA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.69 54.0 4.35e-01 95.7% 44.4%
2rcqA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.65 51.0 4.10e-01 94.3% 43.3%
4xmeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.64 52.0 3.85e-01 88.6% 42.9%
7xr9E01 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.64 51.0 3.65e-01 85.7% 78.7%
5gv0A00 2.40.160.110 Mainly Beta › Beta Barrel › Porin › 0.63 55.0 4.17e-01 95.7% 52.5%
1qhdA01 2.60.120.170 Mainly Beta › Sandwich › Jelly Rolls › 0.62 44.0 3.30e-01 75.7% 98.8%
1ux6A02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 50.0 3.61e-01 91.4% 75.5%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.61 51.0 4.27e-01 92.9% 59.2%
2bs6A01 2.40.128.190 Mainly Beta › Beta Barrel › Lipocalin › 0.60 53.0 5.05e-01 98.6% 95.2%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.60 44.0 3.93e-01 80.0% 76.0%
1e2tA03 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.60 39.0 3.35e-01 88.6% 41.0%
2plgA01 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.59 43.0 3.54e-01 90.0% 40.9%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 43.0 4.33e-01 94.3% 77.5%
1ohfA03 2.60.270.70 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › 0.59 50.0 4.07e-01 98.6% 70.2%
1d6uA03 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.58 51.0 3.15e-01 98.6% 37.1%
3rjuA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.56 47.0 3.10e-01 100.0% 24.5%
1cq3A00 2.60.240.10 Mainly Beta › Sandwich › Viral Chemokine Inhibitor; Chain A › Major secreted virus protein 0.56 44.0 3.05e-01 84.3% 70.1%
4ftxB01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.55 41.0 3.40e-01 80.0% 44.5%
2cn2A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 46.0 2.97e-01 100.0% 34.8%
4bbwA02 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.55 47.0 3.05e-01 100.0% 47.4%
4l9cA00 3.40.1000.30 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › 0.55 49.0 3.83e-01 100.0% 58.0%
5upiA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.51 47.0 3.37e-01 100.0% 87.8%
ECOD (36)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4033339 520.1.1.2 beta sandwiches › gp9 N-terminal domain-like › gp9 N-terminal domain-related › gp9 N-terminal domain-related › PF27308 0.91 84.0 7.76e-01 98.6% 88.2%
3967853 243.19.1.0 a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains 0.84 77.0 6.43e-01 100.0% 67.0%
4033743 243.19.1.0 a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains 0.83 75.0 7.04e-01 100.0% 90.6%
3230371 3180.1.1.0 a+b two layers › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related › LEE-encoded effector EspG N-terminal domain-related 0.78 52.0 4.39e-01 84.3% 43.6%
2581425 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.77 51.0 5.67e-01 84.3% 87.3%
4404709 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.73 56.0 4.14e-01 85.7% 32.6%
3479716 3459.1.1.0 beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule 0.72 46.0 4.32e-01 82.9% 54.1%
3242315 145.1.1.0 alpha arrays › F-box domain › F-box domain › F-box domain 0.71 46.0 5.15e-01 72.9% 85.5%
4390515 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.69 53.0 4.07e-01 85.7% 36.3%
4951786 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.67 56.0 3.68e-01 92.9% 36.8%
3922884 5.1.4.271 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, PF30361 0.66 58.0 3.69e-01 100.0% 34.4%
4419937 77.1.1.0 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein 0.66 52.0 4.92e-01 100.0% 71.8%
3583675 5.1.4.321 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30361 0.64 56.0 3.63e-01 100.0% 42.1%
3690594 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.64 57.0 3.37e-01 100.0% 17.9%
3038786 298.1.1.8 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C 0.64 50.0 3.50e-01 85.7% 68.6%
1263 10.5.1.3 beta sandwiches › jelly-roll › Viral protein domain › Viral protein domain › Rota_Capsid_VP6 0.62 44.0 3.23e-01 75.7% 91.8%
4262159 2004.1.1.308 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.60 47.0 3.00e-01 84.3% 31.9%
3427945 284.1.3.0 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.59 46.0 4.09e-01 82.9% 58.0%
5009130 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.59 47.0 2.98e-01 85.7% 30.1%
4400687 2004.1.1.782 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23, AAA_29, SbcC_Walker_B 0.59 47.0 2.86e-01 85.7% 23.6%
4014784 9.14.1.1 beta barrels › Lipocalins/Streptavidin › Uncharacterized protein YLR301W › Uncharacterized protein YLR301W › HRI1 0.59 47.0 4.18e-01 85.7% 62.2%
4568749 2004.1.1.585 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15, AAA_21, AAA_23 0.59 46.0 2.92e-01 84.3% 30.3%
5014331 2004.1.1.293 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 0.59 46.0 2.62e-01 84.3% 14.4%
3480143 241.15.1.0 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.59 50.0 3.93e-01 95.7% 94.0%
3287473 5.1.2.19 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › DUF4185 0.58 49.0 3.20e-01 98.6% 38.9%
3793430 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.57 47.0 4.30e-01 92.9% 91.6%
3615000 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.57 45.0 3.63e-01 90.0% 58.6%
5035736 71.1.1.26 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › DUF3108 0.56 49.0 3.76e-01 100.0% 97.1%
3821429 241.15.1.0 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.56 47.0 3.64e-01 94.3% 78.1%
4991973 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 49.0 3.27e-01 100.0% 37.5%
3702988 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.53 45.0 4.02e-01 98.6% 92.4%
3556145 10.1.1.35 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.53 46.0 3.31e-01 100.0% 51.6%
3625965 4184.1.1.2 beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.52 38.0 3.49e-01 80.0% 57.9%
3797677 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 45.0 3.02e-01 100.0% 25.4%
4936791 2004.1.1.87 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.51 44.0 2.74e-01 100.0% 24.1%
2027915 12.1.1.92 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › GLMA_C 0.51 39.0 4.05e-01 82.9% 98.4%