←Back to structures

NC_047779.1__YP_009787358.1__HOR30_gp11__00011

Bact-Vir

NC_047779.1__YP_009787358.1__HOR30_gp11__00011

Identity

Accession:
NC_047779 ↗
Kingdom:
phage

Quality

84.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autoscriptoviridae› Drulisvirus› Klebsiella_phage_KP-Rio/2015

TaxID: 1904925

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-71
PDB
Domain cluster: representative
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1krlA00 6.20.50.130 Special › Other non-globular › N-terminal domain of TfIIb › 0.76 39.0 4.75e-01 85.7% 79.5%
2dchX02 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.73 51.0 4.35e-01 72.9% 73.9%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.63 37.0 3.38e-01 82.9% 43.6%
3hlzB01 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.60 45.0 3.61e-01 97.1% 40.0%
2bbhA01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.60 45.0 3.58e-01 82.9% 82.8%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.60 43.0 4.40e-01 100.0% 83.6%
1u5uA00 2.40.180.10 Mainly Beta › Beta Barrel › Catalase HpII, Chain A, domain 1 › Catalase core domain 0.59 52.0 3.31e-01 100.0% 64.2%
4kc7A02 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.59 39.0 3.60e-01 88.6% 49.5%
3p06A00 3.30.230.110 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.59 46.0 3.32e-01 84.3% 60.3%
4z9cB00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 44.0 3.81e-01 82.9% 89.6%
2k75A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 44.0 3.94e-01 82.9% 78.6%
3iq2A00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.58 40.0 3.40e-01 72.9% 73.2%
2vbuA01 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.58 42.0 3.47e-01 90.0% 42.3%
6zj8D01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 41.0 3.50e-01 75.7% 76.3%
1cjxB02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.57 41.0 3.03e-01 78.6% 86.1%
3obqA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.56 48.0 3.82e-01 94.3% 48.9%
1b7eA01 3.90.350.10 Alpha Beta › Alpha-Beta Complex › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 0.56 47.0 3.28e-01 95.7% 32.1%
4jbmB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 39.0 3.65e-01 77.1% 83.3%
4kcaA03 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.56 44.0 3.96e-01 85.7% 100.0%
1ej8A00 2.60.40.200 Mainly Beta › Sandwich › Immunoglobulin-like › Superoxide dismutase, copper/zinc binding domain 0.55 38.0 3.13e-01 72.9% 92.9%
6heiA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.55 38.0 2.50e-01 100.0% 15.3%
3htnB00 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.54 46.0 3.73e-01 100.0% 48.9%
4indA01 2.60.120.1320 Mainly Beta › Sandwich › Jelly Rolls › 0.54 43.0 3.41e-01 85.7% 91.8%
5nslA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 45.0 2.84e-01 97.1% 32.7%
4i86A00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.53 39.0 3.50e-01 78.6% 92.2%
3fzxA00 2.40.360.20 Mainly Beta › Beta Barrel › YmcC-like fold › 0.53 43.0 3.08e-01 91.4% 29.2%
2iw3A05 2.40.50.990 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 43.0 3.78e-01 91.4% 67.0%
3kf8A00 2.40.50.1040 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 40.0 3.01e-01 88.6% 64.7%
1tp6A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 37.0 3.08e-01 75.7% 66.7%
7rd0A02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.51 41.0 2.74e-01 91.4% 96.3%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 39.0 3.45e-01 85.7% 90.0%
3ke7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 38.0 3.16e-01 81.4% 64.7%
1wqsA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 41.0 3.75e-01 100.0% 64.1%
1ln1A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 43.0 3.13e-01 94.3% 49.3%
3vskA03 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.50 37.0 2.48e-01 82.9% 96.6%
3k8aB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 35.0 3.17e-01 72.9% 87.4%
1qlmA02 3.30.1030.10 Alpha Beta › 2-Layer Sandwich › Methenyltetrahydromethanopterin Cyclohydrolase; Chain A, domain 2 › Methenyltetrahydromethanopterin Cyclohydrolase; Chain A, domain 2 0.50 41.0 3.03e-01 92.9% 83.3%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4045121 243.3.1.3 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY 0.77 51.0 4.89e-01 87.1% 60.0%
3651210 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.74 46.0 5.00e-01 91.4% 75.0%
3456692 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.71 45.0 4.84e-01 92.9% 76.3%
3198252 1.1.17.4 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_S64 0.68 53.0 3.99e-01 100.0% 34.7%
4971602 316.1.1.45 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › DUF4269 0.68 52.0 4.07e-01 82.9% 58.8%
4485576 1.1.17.4 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Peptidase_S64 0.66 51.0 3.40e-01 100.0% 20.3%
3192520 2004.1.1.146 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase 0.66 50.0 3.39e-01 82.9% 97.5%
3789008 1.1.5.85 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Peptidase_S64 0.65 51.0 3.35e-01 100.0% 19.4%
5032539 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 54.0 5.59e-01 94.3% 100.0%
4027244 6127.1.1.0 ↗ beta meanders › Beta meander domain in PfEMP1 protein › Beta meander domain in PfEMP1 protein › Beta meander domain in PfEMP1 protein 0.64 43.0 4.02e-01 71.4% 83.3%
4931409 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 50.0 4.19e-01 91.4% 90.8%
5072187 321.1.1.7 ↗ a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GCS2 0.62 50.0 3.02e-01 87.1% 26.9%
3231216 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 41.0 4.56e-01 94.3% 96.0%
3282593 4121.1.1.1 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.62 46.0 3.19e-01 80.0% 27.9%
3986557 2484.1.1.199 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut 0.61 47.0 4.03e-01 84.3% 81.7%
3760297 211.1.1.37 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Teneurin_ABD 0.61 48.0 4.04e-01 85.7% 77.5%
4952182 223.1.1.14 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.61 43.0 3.75e-01 75.7% 94.5%
4958640 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.60 48.0 3.65e-01 88.6% 88.5%
3718687 220.1.1.175 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_31 0.60 55.0 4.23e-01 100.0% 71.3%
3490141 216.1.1.3 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.60 51.0 4.04e-01 94.3% 49.7%
3251420 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 48.0 4.49e-01 100.0% 72.2%
3891434 216.1.1.3 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.59 50.0 4.00e-01 94.3% 52.1%
3892129 216.1.1.3 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.59 50.0 3.99e-01 94.3% 51.4%
3625971 216.1.1.3 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.59 49.0 3.92e-01 94.3% 49.7%
3634173 216.1.1.3 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.59 50.0 3.89e-01 95.7% 47.1%
3368743 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.58 42.0 4.41e-01 77.1% 96.7%
3913149 216.1.1.3 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.58 49.0 3.86e-01 94.3% 48.0%
3232550 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.58 40.0 3.85e-01 94.3% 60.0%
3484671 3433.1.1.0 ↗ a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Plasmid-encoded ParB dimerization domain 0.58 37.0 4.20e-01 90.0% 92.0%
3956586 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.58 46.0 3.19e-01 100.0% 25.4%
3347601 216.1.1.3 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.57 48.0 3.76e-01 94.3% 47.1%
3816041 2004.1.1.299 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF1995 0.57 40.0 2.76e-01 75.7% 78.8%
3921641 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 45.0 3.76e-01 87.1% 84.8%
5013239 220.1.1.219 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.57 49.0 4.27e-01 100.0% 86.4%
4013325 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.57 48.0 4.08e-01 100.0% 68.0%
3270992 216.1.1.3 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.56 48.0 3.83e-01 94.3% 49.3%
4930437 220.1.1.219 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.56 46.0 4.09e-01 92.9% 67.6%
3424085 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.56 50.0 3.21e-01 100.0% 29.7%
5001970 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.56 48.0 3.87e-01 100.0% 50.3%
5031715 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 47.0 3.80e-01 94.3% 52.6%
3538024 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.56 39.0 2.49e-01 72.9% 96.6%
5018391 4111.1.1.2 ↗ a+b two layers › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › AF0104/ALDC/Ptd012-like › PCC 0.55 47.0 3.82e-01 100.0% 52.4%
3452728 1.1.17.3 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 0.55 44.0 3.20e-01 100.0% 30.2%
5055744 5.1.3.40 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylsulfotran_2 0.55 44.0 2.83e-01 90.0% 46.8%
5055280 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.54 39.0 3.11e-01 77.1% 69.7%
4493573 4964.1.1.2 ↗ alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol 0.54 44.0 3.32e-01 95.7% 49.5%
3253267 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 43.0 4.08e-01 94.3% 75.3%
3194821 10.32.1.94 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CDC50 0.54 45.0 3.38e-01 95.7% 86.2%
3596331 243.1.1.2 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.54 43.0 3.65e-01 92.9% 86.7%
3994973 101.1.12.3 ↗ alpha arrays › HTH › HTH › HTH motif inserted in other structures › SAS-6_N 0.53 46.0 3.82e-01 100.0% 85.4%
3463768 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 46.0 3.00e-01 100.0% 33.2%
3706741 5.1.3.28 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.51 41.0 2.90e-01 92.9% 84.5%
5034706 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.51 42.0 4.18e-01 100.0% 85.3%
3391867 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 44.0 3.62e-01 100.0% 70.4%
3554870 331.3.1.3 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › START 0.51 42.0 3.07e-01 94.3% 48.8%
3440015 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.50 40.0 3.71e-01 91.4% 86.3%