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NC_047790.1__YP_009787973.1__HOR41_gp04__00004

Bact-Vir

NC_047790.1__YP_009787973.1__HOR41_gp04__00004

Identity

Accession:
NC_047790 ↗
Kingdom:
phage

Quality

86.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Peduoviridae› Catalunyavirus› Pseudoalteromonas_phage_C5a

TaxID: 1916107

Cluster

View cluster (12 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-112
PDB
Domain cluster: rep: MK448705.1__QBX15854.1__Javan215_0051__00005__D138-257
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00717.29 best Peptidase_S24 62.2 5.30e-17 94.3% 76.7%
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ay9A00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.95 82.0 8.23e-01 89.6% 90.7%
1f39A00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.91 73.0 7.52e-01 83.0% 93.1%
1jheA00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.84 80.0 7.53e-01 100.0% 92.7%
3k2zA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.84 80.0 7.64e-01 100.0% 97.5%
1b12C01 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.83 64.0 6.11e-01 80.2% 82.6%
1kjzA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 32.0 3.43e-01 82.1% 68.5%
4zgnB00 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 33.0 3.35e-01 96.2% 66.0%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3945057 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.93 81.0 7.58e-01 89.6% 77.6%
4075150 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.88 77.0 6.08e-01 90.6% 50.8%
4036705 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.85 81.0 7.36e-01 100.0% 84.4%
4607208 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.85 80.0 7.53e-01 98.1% 93.5%
4331428 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.85 81.0 7.25e-01 100.0% 85.0%
4447540 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.85 81.0 7.15e-01 100.0% 80.0%
3970039 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.85 81.0 7.22e-01 100.0% 92.9%
4071971 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.84 80.0 7.08e-01 100.0% 79.3%
4493478 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.84 80.0 7.38e-01 100.0% 90.8%
3973676 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.84 80.0 7.51e-01 100.0% 94.4%
5065747 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.84 67.0 7.23e-01 82.1% 98.9%
4406602 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.84 80.0 7.17e-01 100.0% 88.4%
1323508 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.83 65.0 5.89e-01 81.1% 95.7%
3963760 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.82 78.0 6.92e-01 100.0% 88.8%
4007999 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.82 78.0 7.08e-01 100.0% 88.9%
4034190 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.82 76.0 6.98e-01 97.2% 86.9%
4259069 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.82 69.0 5.50e-01 89.6% 62.0%
3974846 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.81 69.0 6.81e-01 89.6% 91.8%
4646593 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.80 76.0 6.90e-01 100.0% 89.6%
4034335 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.80 73.0 7.28e-01 96.2% 97.3%
3290509 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.76 59.0 6.41e-01 81.1% 95.6%
None — 0.76 67.0 5.62e-01 93.4% 96.5%
3164898 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.75 61.0 6.47e-01 86.8% 100.0%
3989651 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.75 67.0 5.29e-01 93.4% 89.9%
4937389 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.74 66.0 6.55e-01 95.3% 90.0%
3615426 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.74 66.0 5.82e-01 94.3% 74.0%
4525683 4.11.1.3 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Phage_CI_C 0.74 64.0 6.22e-01 100.0% 83.1%
4999430 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.73 64.0 6.10e-01 99.1% 81.7%
3976863 4.11.1.3 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Phage_CI_C 0.73 63.0 6.39e-01 100.0% 93.3%
3942297 4.11.1.3 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Phage_CI_C 0.72 62.0 6.14e-01 100.0% 86.7%