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NC_047790.1__YP_009787976.1__HOR41_gp07__00007

Bact-Vir

NC_047790.1__YP_009787976.1__HOR41_gp07__00007

Identity

Accession:
NC_047790 ↗
Kingdom:
phage

Quality

75.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 45-97
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4l0rB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.86 66.0 5.93e-01 83.0% 60.3%
1sg2A00 3.30.910.20 Alpha Beta › 2-Layer Sandwich › Protein Binding, DinI Protein; Chain A › Skp domain 0.85 65.0 4.72e-01 83.0% 31.2%
4hkaA02 1.10.287.3810 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.83 62.0 6.38e-01 79.2% 82.4%
4gczA03 1.10.287.130 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain 0.82 65.0 6.04e-01 86.8% 69.2%
1dpsA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.82 72.0 5.11e-01 100.0% 83.6%
4fvmA06 1.10.287.690 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain 0.81 58.0 6.03e-01 75.5% 83.3%
4iloA00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.81 65.0 4.13e-01 86.8% 31.8%
2oxlA00 1.20.5.5260 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.80 65.0 6.17e-01 88.7% 82.3%
2ib0A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.79 69.0 5.17e-01 100.0% 87.4%
1kz7A01 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.79 69.0 4.70e-01 100.0% 91.2%
2oh3A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.79 69.0 5.03e-01 100.0% 91.7%
2a26B01 4.10.860.10 Few Secondary Structures › Irregular › DNA Excision Repair, Uvrb; Chain A › UVR domain 0.79 54.0 5.73e-01 71.7% 88.6%
4r42A01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.78 67.0 4.61e-01 100.0% 79.7%
2rpaA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.78 69.0 6.09e-01 100.0% 93.5%
3txsC01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.77 60.0 5.41e-01 86.8% 65.3%
2qywA00 1.20.58.400 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins 0.77 68.0 5.63e-01 100.0% 90.5%
3go9A02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.76 58.0 3.80e-01 83.0% 60.4%
3vurA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.75 60.0 4.65e-01 86.8% 54.9%
3bvoA02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.75 59.0 5.04e-01 86.8% 58.1%
4etrB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.75 66.0 5.06e-01 100.0% 89.3%
1fioA00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.75 65.0 4.40e-01 96.2% 73.7%
1u89A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.75 64.0 4.79e-01 100.0% 57.6%
2gw1A02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.75 65.0 3.93e-01 100.0% 19.7%
4fxdA04 3.90.1600.10 Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain 0.75 59.0 4.21e-01 86.8% 30.1%
2rkhA02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.74 63.0 5.58e-01 94.3% 98.7%
2o8pA00 1.20.190.20 Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › 14-3-3 domain 0.74 57.0 3.77e-01 86.8% 38.8%
4hb1A00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.74 54.0 5.80e-01 79.2% 97.7%
1hn0A02 1.50.10.100 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase 0.73 64.0 3.79e-01 98.1% 27.3%
2crbA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.73 64.0 5.25e-01 100.0% 72.2%
1vw4L01 3.90.1030.10 Alpha Beta › Alpha-Beta Complex › 50s Ribosomal Protein L17; Chain: A, › Ribosomal protein L17 0.73 52.0 3.82e-01 96.2% 29.6%
2wzkA01 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.73 57.0 4.33e-01 86.8% 68.5%
2rbdA01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.72 62.0 4.53e-01 100.0% 86.7%
3kkbA00 1.20.120.880 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Histidine kinase (KinB), sensor domain 0.70 59.0 4.59e-01 100.0% 57.9%
1vf6C00 1.10.287.650 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › L27 domain 0.70 48.0 4.95e-01 75.5% 78.4%
1dd9A03 1.20.50.20 Mainly Alpha › Up-down Bundle › Pheromone ER-1 › DnaG, RNA polymerase domain, helical bundle 0.69 54.0 5.22e-01 84.9% 86.4%
1owlA02 1.25.40.80 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.68 55.0 4.32e-01 94.3% 67.5%
3besR03 6.10.140.1480 Special › Helix non-globular › Helix Hairpins › 0.67 51.0 5.05e-01 84.9% 91.1%
3mzoB00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.66 55.0 3.75e-01 100.0% 71.0%
3m1cB01 3.30.390.170 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.66 51.0 4.18e-01 90.6% 64.2%
2au3A04 1.20.50.30 Mainly Alpha › Up-down Bundle › Pheromone ER-1 › 0.64 50.0 5.02e-01 84.9% 83.6%
1oyzA00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.64 51.0 3.28e-01 90.6% 24.5%
1hr5A00 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.64 49.0 5.07e-01 86.8% 93.8%
4fd4A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.61 53.0 3.55e-01 100.0% 32.5%
4c9bB00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.60 52.0 3.30e-01 98.1% 89.9%
3amiA02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.60 49.0 3.34e-01 94.3% 68.3%
1go3F02 6.10.140.10 Special › Helix non-globular › Helix Hairpins › 0.59 42.0 4.35e-01 94.3% 89.4%
3l0mA02 1.20.1280.280 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.59 51.0 4.54e-01 100.0% 89.7%
3s6jE02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.51 43.0 3.98e-01 96.2% 72.5%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3219646 3826.1.1.0 alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) 0.90 74.0 7.34e-01 86.8% 83.6%
3974197 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.87 67.0 5.81e-01 83.0% 55.0%
4115372 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.87 68.0 5.22e-01 83.0% 40.0%
4040184 605.1.1.4 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 0.87 67.0 6.88e-01 83.0% 88.0%
3692552 5071.3.1.0 alpha bundles › cytochrome bc1 complex 11 kDa protein-like › DUF465 › DUF465 0.86 66.0 6.19e-01 83.0% 67.7%
4016578 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.84 79.0 6.08e-01 100.0% 83.8%
3684136 604.1.1.154 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF27021 0.84 79.0 6.00e-01 100.0% 93.6%
4258985 4229.1.1.2 alpha bundles › Indolic compounds 2,3-dioxygenase-like › Indolic compounds 2,3-dioxygenase-like › Indolic compounds 2,3-dioxygenase-like › Trp_dioxygenase 0.84 68.0 3.99e-01 86.8% 16.7%
3447097 603.1.1.99 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27021 0.84 79.0 6.00e-01 100.0% 95.5%
3956906 605.1.1.4 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA_3 0.84 64.0 5.68e-01 83.0% 58.7%
3733319 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.83 78.0 5.84e-01 100.0% 91.3%
3619577 192.5.1.0 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat 0.83 63.0 5.28e-01 83.0% 48.9%
3409567 3755.3.1.324 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF725 0.83 66.0 4.57e-01 86.8% 27.9%
5043119 4970.1.1.0 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.82 65.0 5.96e-01 86.8% 65.7%
3492075 3729.1.1.1 alpha arrays › Legumain prodomain › Legumain prodomain › Legumain prodomain › Legum_prodom 0.82 63.0 4.76e-01 84.9% 35.5%
3414399 5086.1.1.106 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › DUF725 0.81 62.0 4.24e-01 81.1% 25.3%
4975245 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.81 76.0 6.23e-01 100.0% 85.2%
3402110 604.12.1.1 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.81 73.0 5.96e-01 100.0% 73.7%
4127368 192.6.1.0 alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain 0.81 63.0 6.46e-01 84.9% 90.0%
3614078 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.81 64.0 4.85e-01 86.8% 39.2%
2814929 150.1.1.14 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › EncFtn-like 0.80 63.0 5.83e-01 86.8% 77.9%
4017128 5055.1.1.6 extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel › CENPU 0.80 60.0 4.23e-01 83.0% 27.3%
4159500 604.12.1.1 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.80 72.0 6.09e-01 100.0% 82.4%
4937862 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.80 63.0 4.94e-01 86.8% 42.7%
4041347 192.7.1.2 alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm › Seryl_tRNA_N 0.80 63.0 4.94e-01 86.8% 42.7%
3704286 604.12.1.8 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › KATNA1_MIT 0.79 70.0 5.68e-01 100.0% 70.0%
3358885 604.12.1.8 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › KATNA1_MIT 0.79 71.0 6.16e-01 100.0% 85.0%
3724761 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.79 71.0 6.43e-01 100.0% 91.4%
3418094 604.12.1.1 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.79 72.0 6.19e-01 100.0% 85.0%
3686751 604.12.1.1 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.79 71.0 6.15e-01 100.0% 86.3%
3225484 604.12.1.1 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.79 71.0 6.43e-01 100.0% 100.0%
3385229 2003.1.9.1 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Activating enzymes of the ubiquitin-like proteins › ThiF 0.78 59.0 3.53e-01 83.0% 12.1%
3675860 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.78 70.0 4.76e-01 100.0% 51.9%
3402327 3755.3.1.324 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › DUF725 0.78 59.0 4.13e-01 83.0% 25.9%
4446039 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.78 61.0 5.60e-01 86.8% 67.1%
4977808 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.78 67.0 6.13e-01 98.1% 98.6%
3987389 2004.1.1.5 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.77 61.0 3.48e-01 86.8% 9.3%
3355429 150.1.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.77 61.0 5.71e-01 86.8% 72.3%
3589429 4159.1.1.0 alpha arrays › SP0561-like › SP0561-like › SP0561-like 0.77 56.0 4.96e-01 79.2% 54.7%
4034237 5055.1.1.0 extended segments › Small-conductance potassium channel › Small-conductance potassium channel › Small-conductance potassium channel 0.77 65.0 5.02e-01 94.3% 58.3%
3603633 3997.1.1.1 alpha arrays › Helical insertion domain in magnesium chelatase catalytic subunit › Helical insertion domain in magnesium chelatase catalytic subunit › Helical insertion domain in magnesium chelatase catalytic subunit › CobN-Mg_chel 0.77 57.0 3.87e-01 81.1% 22.6%
57654 4970.1.1.0 alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I 0.76 60.0 5.99e-01 86.8% 85.2%
3927321 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.76 66.0 5.83e-01 100.0% 83.7%
3263335 198.1.1.2 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.76 59.0 5.18e-01 84.9% 60.0%
5000553 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.75 65.0 5.95e-01 98.1% 97.1%
3785919 109.4.1.72 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vps16_C 0.75 62.0 4.16e-01 94.3% 24.9%
4667176 3755.3.1.517 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › PF29650 0.74 65.0 4.14e-01 100.0% 29.8%
3414767 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.74 64.0 5.67e-01 100.0% 85.0%
3281786 371.1.1.0 few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 0.74 64.0 4.81e-01 100.0% 71.1%
3976663 3812.1.1.1 alpha bundles › Type III secretion protein YscE › Type III secretion protein YscE › Type III secretion protein YscE › T3SS_needle_E 0.73 56.0 5.32e-01 86.8% 72.3%
3578166 3198.1.1.1 alpha bundles › ABA-1 repeat unit › ABA-1 repeat unit › ABA-1 repeat unit › NPA 0.73 60.0 4.49e-01 92.5% 36.3%
4978312 604.12.1.1 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.72 63.0 5.79e-01 100.0% 98.6%
3927225 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.72 61.0 4.13e-01 100.0% 27.8%
3261605 198.1.1.2 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.70 54.0 4.75e-01 84.9% 61.3%
3439874 109.4.1.1258 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_1, PPR_2 0.69 60.0 3.51e-01 100.0% 21.8%
3741080 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.68 59.0 4.07e-01 96.2% 33.3%
4120048 198.1.1.2 alpha arrays › Saposin-like › Saposin-like › Saposin-like › SapB_2,SapB_1 0.63 50.0 3.55e-01 86.8% 30.3%