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NC_047794.1__YP_009788205.1__HOR45_gp02__00002

Bact-Vir

NC_047794.1__YP_009788205.1__HOR45_gp02__00002

Identity

Accession:
NC_047794 ↗
Kingdom:
phage

Quality

90.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Picardvirus› Streptomyces_phage_Picard

TaxID: 1920311

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-66
PDB
Domain cluster: rep: MN234178.1__QFG09558.1__PBI_TRIPLEJ_14__00014__D33-88
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3nqzA01 3.10.450.490 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.79 50.0 4.25e-01 73.7% 40.7%
2il5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.66 48.0 3.50e-01 94.7% 27.8%
1wruA01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.66 50.0 3.48e-01 80.7% 43.4%
3d37B01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.63 47.0 3.34e-01 80.7% 46.0%
1ue6D00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 43.0 3.54e-01 77.2% 39.4%
3lq6A02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.62 43.0 3.51e-01 73.7% 78.1%
3rmhB00 2.40.50.810 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 42.0 3.19e-01 73.7% 30.1%
3cxjA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.62 45.0 3.34e-01 89.5% 30.6%
3q39B02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.62 43.0 3.52e-01 73.7% 78.2%
3kulA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.62 40.0 3.49e-01 78.9% 42.7%
1cboA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 46.0 2.87e-01 82.5% 62.7%
4bb7B00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.60 50.0 3.37e-01 94.7% 34.6%
6j0qA02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.60 42.0 3.43e-01 73.7% 78.9%
2eixA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.60 43.0 3.50e-01 77.2% 64.2%
3ovcA01 3.30.200.150 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.59 43.0 4.01e-01 87.7% 62.0%
4n4bA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.59 51.0 3.21e-01 100.0% 49.2%
3ulpD00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 42.0 3.39e-01 77.2% 42.5%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 42.0 3.41e-01 77.2% 43.6%
5ds1A00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 40.0 3.45e-01 73.7% 100.0%
3k8aB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 42.0 3.45e-01 77.2% 46.6%
3oguA03 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.57 45.0 3.58e-01 89.5% 40.7%
3c6kA01 3.30.160.110 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain 0.57 39.0 3.42e-01 86.0% 44.7%
4gzvA00 2.40.128.490 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14869 family, DUF4488 0.56 46.0 3.53e-01 93.0% 45.3%
3dsmA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 48.0 3.03e-01 100.0% 33.6%
4fczA00 3.10.450.710 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Tgt2/MlaC 0.56 44.0 3.19e-01 91.2% 69.9%
1gteA04 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 48.0 3.59e-01 100.0% 92.2%
6mv2A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 40.0 3.30e-01 77.2% 73.3%
3u4vA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 35.0 2.82e-01 75.4% 31.0%
2dy1A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.55 38.0 3.23e-01 73.7% 70.1%
3c8iA00 2.40.410.10 Mainly Beta › Beta Barrel › putative membrane protein from Corynebacterium diphtheriae fold › putative membrane protein from Corynebacterium diphtheriae superfamily 0.54 37.0 2.97e-01 77.2% 32.3%
8dqwG01 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.54 41.0 3.00e-01 86.0% 29.1%
4wrnA02 2.60.40.3210 Mainly Beta › Sandwich › Immunoglobulin-like › Zona pellucida, ZP-N domain 0.54 39.0 3.25e-01 80.7% 42.9%
2yj6A02 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.53 41.0 3.48e-01 89.5% 50.5%
4htgA03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.53 44.0 3.99e-01 94.7% 72.2%
4b43A03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 37.0 3.00e-01 73.7% 57.4%
3bt3A02 3.30.720.110 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.52 36.0 3.67e-01 84.2% 75.4%
1w2wB00 3.40.50.10470 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Translation initiation factor eif-2b; domain 2 0.52 44.0 3.15e-01 98.2% 78.5%
2dg1C00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.52 45.0 2.84e-01 100.0% 34.1%
2bolA03 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 36.0 3.25e-01 84.2% 48.4%
3tufB00 2.70.70.10 Mainly Beta › Distorted Sandwich › Glucose Permease (Domain IIA) › Glucose Permease (Domain IIA) 0.51 41.0 3.02e-01 89.5% 42.4%
1lfwA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 35.0 2.99e-01 73.7% 43.4%
3djmA00 2.170.150.40 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › Domain of unknown function (DUF427) 0.51 33.0 2.72e-01 73.7% 33.0%
1g7sA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 36.0 2.93e-01 73.7% 70.4%
1fohA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 38.0 2.59e-01 86.0% 96.0%
1gmeA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 39.0 2.94e-01 86.0% 42.0%
3aabB00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 38.0 3.19e-01 84.2% 49.1%
3licA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.50 35.0 3.16e-01 77.2% 59.8%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3964458 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.73 42.0 3.60e-01 73.7% 36.7%
4611577 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.68 48.0 4.26e-01 73.7% 62.5%
3853596 4.25.1.2 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD 0.66 51.0 3.95e-01 86.0% 71.5%
3635930 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.66 42.0 3.10e-01 73.7% 24.5%
4978118 241.1.1.5 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › DUF2299 0.64 46.0 3.37e-01 86.0% 28.4%
4872941 10.2.1.43 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Calici_coat_C 0.63 44.0 3.51e-01 73.7% 74.8%
3437078 708.1.1.1 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.62 48.0 3.48e-01 84.2% 31.9%
432602 2.1.1.93 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Cdc13_OB4_dimer 0.62 42.0 3.19e-01 73.7% 30.1%
4970832 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.62 47.0 3.72e-01 84.2% 64.8%
3926536 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.62 49.0 3.11e-01 84.2% 23.8%
4611007 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.61 45.0 3.67e-01 86.0% 40.4%
4934107 331.3.1.7 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG 0.61 50.0 3.62e-01 89.5% 33.5%
3645656 243.3.1.19 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.61 44.0 3.93e-01 77.2% 56.2%
4353273 331.9.1.10 ↗ a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › PF28631 0.60 44.0 3.31e-01 89.5% 30.7%
3973947 3454.1.1.0 ↗ beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like 0.59 41.0 3.83e-01 71.9% 60.0%
3957335 331.3.1.2 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Ring_hydroxyl_A 0.59 40.0 3.24e-01 93.0% 34.8%
3457651 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.57 40.0 2.58e-01 78.9% 14.3%
4382028 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 37.0 4.15e-01 94.7% 97.5%
4630281 327.13.1.2 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system › YscJ_FliF_C 0.57 47.0 3.29e-01 89.5% 64.0%
3292855 220.1.1.36 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.57 35.0 2.75e-01 94.7% 28.8%
3706182 3270.1.1.0 ↗ a+b two layers › a+b domain in heme oxygenase › a+b domain in heme oxygenase › a+b domain in heme oxygenase 0.57 48.0 4.02e-01 96.5% 55.0%
4032043 331.3.1.9 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.57 48.0 3.46e-01 94.7% 46.1%
3684267 5.1.10.15 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed › RPE65 0.57 42.0 3.29e-01 84.2% 36.2%
3279958 211.1.1.1 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase 0.56 42.0 3.81e-01 82.5% 58.7%
3432354 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.56 39.0 3.15e-01 71.9% 83.8%
4012953 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.56 44.0 3.29e-01 89.5% 44.0%
3710799 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.55 43.0 2.54e-01 86.0% 10.9%
4341414 2011.1.1.21 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Zn-dependent exopeptidases › Zn-dependent exopeptidases › Gaa1 0.55 43.0 2.77e-01 89.5% 27.6%
5076798 321.1.1.7 ↗ a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GCS2 0.55 45.0 2.68e-01 94.7% 12.0%
3237482 2003.1.2.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox 0.55 47.0 3.51e-01 100.0% 91.6%
3592570 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.55 41.0 3.44e-01 86.0% 67.3%
3814098 4.6.1.2 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.54 46.0 4.00e-01 96.5% 66.7%
3782159 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.54 42.0 3.56e-01 84.2% 68.4%
3736229 220.1.1.197 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF28623 0.54 46.0 3.64e-01 100.0% 52.0%
3252048 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.53 41.0 3.20e-01 86.0% 38.5%
3686820 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 47.0 2.81e-01 100.0% 23.9%
3652333 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.53 41.0 3.37e-01 84.2% 50.5%
3262596 101.1.12.0 ↗ alpha arrays › HTH › HTH › HTH motif inserted in other structures 0.53 33.0 3.71e-01 71.9% 90.0%
4014026 5.1.5.71 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DUF2415 0.52 38.0 2.34e-01 84.2% 36.5%
5070341 325.1.7.2 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RNA_pol_Rpb2_6 0.52 38.0 3.14e-01 84.2% 67.2%
3784872 267.1.1.0 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain 0.52 42.0 3.20e-01 93.0% 44.0%
5059099 241.2.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like 0.51 38.0 3.39e-01 82.5% 52.3%
294 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.51 38.0 2.86e-01 80.7% 34.5%
3479988 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 35.0 2.53e-01 78.9% 22.6%
4030418 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.51 41.0 3.27e-01 100.0% 85.0%
3687369 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.51 38.0 3.29e-01 86.0% 72.0%
3389979 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.50 38.0 3.08e-01 84.2% 40.0%
3575535 1.1.7.113 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › AAA_11, AAA_12 0.50 35.0 2.08e-01 73.7% 14.6%
3294459 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.50 39.0 3.22e-01 86.0% 54.3%
3736329 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.50 37.0 2.78e-01 87.7% 36.7%