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NC_047794.1__YP_009788216.1__HOR45_gp13__00013

Bact-Vir

NC_047794.1__YP_009788216.1__HOR45_gp13__00013

Identity

Accession:
NC_047794 ↗
Kingdom:
phage

Quality

91.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Picardvirus› Streptomyces_phage_Picard

TaxID: 1920311

Cluster

View cluster (241 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 59-154
PDB
Domain cluster: rep: NC_002628__NP_071827.1__psiM100p26__00026__D139-234
CATH (47)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4divV01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.68 54.0 4.83e-01 91.7% 60.6%
4w64B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.66 56.0 4.72e-01 92.7% 60.0%
3bp6B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.64 38.0 4.01e-01 93.8% 63.6%
4ponA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.64 37.0 3.05e-01 86.5% 30.8%
3fppA01 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.64 41.0 4.06e-01 86.5% 60.6%
1l2mA00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.62 38.0 3.58e-01 86.5% 50.0%
2fbjH02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 36.0 4.05e-01 86.5% 75.3%
4f80A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 36.0 3.74e-01 89.6% 60.2%
3f8uD03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 43.0 4.17e-01 92.7% 66.0%
1cqkA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 39.0 3.85e-01 91.7% 62.4%
3d2uA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 39.0 3.96e-01 90.6% 68.5%
3bpkA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 52.0 4.23e-01 96.9% 70.4%
1o0vA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 40.0 3.83e-01 92.7% 60.0%
1rtzA00 3.30.70.560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK 0.59 39.0 3.33e-01 87.5% 42.1%
3d3bJ00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.58 40.0 4.20e-01 93.8% 78.2%
3tupA02 3.30.70.380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ferrodoxin-fold anticodon-binding domain 0.58 45.0 4.56e-01 93.8% 81.2%
1dr9A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 37.0 3.76e-01 92.7% 64.2%
1es0A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 38.0 3.78e-01 92.7% 63.6%
3of6E00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 40.0 3.93e-01 93.8% 66.3%
7zqiA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 36.0 3.82e-01 90.6% 70.9%
2pmzB07 2.40.50.150 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain 0.57 46.0 4.25e-01 87.5% 89.5%
3mgjA00 3.30.70.2690 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › LOR/SDH bifunctional enzyme, conserved domain 0.57 38.0 3.86e-01 90.6% 68.8%
2aq6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 48.0 4.23e-01 93.8% 72.7%
3pv7A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 38.0 3.83e-01 87.5% 69.1%
5wl1A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 36.0 3.61e-01 92.7% 61.4%
3ue2A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.56 38.0 3.95e-01 87.5% 76.1%
4z9eA00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.56 36.0 3.82e-01 87.5% 74.1%
1wv4B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 47.0 4.03e-01 92.7% 76.0%
4exkA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 37.0 3.67e-01 90.6% 63.5%
4dj3B02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 48.0 4.13e-01 100.0% 83.1%
2z6cA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 44.0 4.09e-01 88.5% 92.6%
5svgC00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 43.0 4.05e-01 87.5% 99.2%
4nehA04 2.60.40.1510 Mainly Beta › Sandwich › Immunoglobulin-like › ntegrin, alpha v. Chain A, domain 3 0.54 35.0 3.03e-01 90.6% 40.9%
5wy8B03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 39.0 3.75e-01 92.7% 66.1%
4dj3B01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.54 42.0 4.07e-01 86.5% 91.9%
1lfwA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 44.0 4.32e-01 92.7% 86.8%
5jv4A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 48.0 4.17e-01 97.9% 71.8%
3o3uN03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 38.0 3.69e-01 90.6% 65.8%
2hzmG01 3.30.310.180 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.53 40.0 3.77e-01 88.5% 66.1%
1v8cA02 3.30.1370.80 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Molybdopterin cofactor biosynthesis MoaD-related, C-terminal domain 0.53 38.0 4.15e-01 90.6% 91.3%
5lf5A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 35.0 3.60e-01 92.7% 69.9%
2nraC02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 41.0 4.10e-01 85.4% 82.4%
2y3uA02 3.30.980.50 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › 0.52 39.0 3.71e-01 89.6% 68.1%
3sybA00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.51 40.0 2.74e-01 87.5% 85.5%
2ypyA00 3.30.70.390 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Epstein Barr virus nuclear antigen-1, DNA-binding domain 0.51 36.0 3.26e-01 94.8% 53.0%
4hudA01 3.30.2000.40 Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser 0.51 44.0 3.52e-01 100.0% 59.0%
4i5sA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 39.0 3.94e-01 82.3% 98.0%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4157825 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.86 70.0 6.25e-01 94.8% 63.1%
2595159 1.1.13.6 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.79 71.0 5.81e-01 96.9% 64.5%
2642579 1.1.13.6 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.78 69.0 6.12e-01 93.8% 75.4%
4888726 1.1.13.6 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.78 72.0 5.93e-01 100.0% 60.4%
2674670 1.1.13.6 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.77 71.0 5.75e-01 100.0% 55.2%
3967003 1.1.13.35 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_TTP_11 0.77 67.0 5.82e-01 92.7% 72.9%
5082881 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.73 63.0 5.70e-01 91.7% 76.0%
3502370 1.1.5.47 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Phage_tube_2 0.72 63.0 5.33e-01 96.9% 63.1%
5083300 1.1.13.6 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.69 62.0 5.39e-01 97.9% 72.4%
3259730 1.1.13.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.69 41.0 3.98e-01 90.6% 51.8%
4982153 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.69 59.0 4.19e-01 92.7% 33.7%
4954551 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.67 59.0 5.26e-01 96.9% 68.9%
4349207 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.65 48.0 4.22e-01 95.8% 51.0%
3289594 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.64 57.0 4.73e-01 97.9% 75.2%
3602499 1.1.5.17 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.62 51.0 4.60e-01 89.6% 73.8%
4968263 1.1.5.91 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_C 0.61 51.0 3.88e-01 90.6% 71.8%
3389932 223.1.1.29 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_11 0.61 50.0 4.44e-01 89.6% 90.6%
4992907 1.1.5.17 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.60 50.0 4.28e-01 90.6% 91.0%
1219773 11.1.1.96 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set 0.59 38.0 3.86e-01 90.6% 64.9%
2137681 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.59 39.0 3.83e-01 86.5% 60.6%
4988254 1.1.5.17 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N 0.59 52.0 4.20e-01 96.9% 63.9%
5036913 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.59 32.0 3.32e-01 87.5% 54.4%
4036849 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.58 48.0 4.27e-01 88.5% 80.5%
3743698 12.3.1.19 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Gal_mutarotas_2 0.57 48.0 3.31e-01 91.7% 44.6%
4960006 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.57 48.0 4.64e-01 92.7% 100.0%
5023975 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.56 42.0 3.84e-01 91.7% 60.0%
4481035 223.1.1.43 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › CusS 0.56 44.0 3.67e-01 84.4% 55.8%
3704437 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.55 43.0 3.98e-01 86.5% 92.3%
4021762 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.54 47.0 2.90e-01 99.0% 31.5%
5053150 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 44.0 3.76e-01 89.6% 66.5%
6344 331.6.1.1 ↗ a+b two layers › TBP-like › MoaD-related protein, C-terminal domain › MoaD-related protein, C-terminal domain › DUF1952 0.53 38.0 4.12e-01 88.5% 91.0%
3385894 872.9.1.0 ↗ a+b two layers › Dodecin subunit-like › Flagella basal-body protein flgT N-terminal domain › Flagella basal-body protein flgT N-terminal domain 0.53 41.0 4.18e-01 84.4% 100.0%
3484132 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 42.0 3.57e-01 88.5% 81.2%
3542371 11.1.1.108 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_2 0.52 34.0 3.37e-01 91.7% 63.0%
4137378 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 43.0 4.05e-01 97.9% 96.0%
5083856 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.51 40.0 3.79e-01 83.3% 83.5%
4978302 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.51 38.0 3.32e-01 91.7% 50.7%
4974181 331.3.1.74 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PF27226 0.51 41.0 4.09e-01 86.5% 84.8%
4970968 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.51 43.0 4.12e-01 92.7% 88.5%
3701881 304.25.1.0 ↗ a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain 0.50 43.0 3.44e-01 92.7% 60.5%