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NC_047794.1__YP_009788231.1__HOR45_gp28__00028
Bact-VirNC_047794.1__YP_009788231.1__HOR45_gp28__00028
Identity
- Accession:
- NC_047794 ↗
- Kingdom:
- phage
Quality
92.9
mean pLDDT
Taxonomy
TaxID: 1920311
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-84_107-143_286-364
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ffyA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.68 | 52.0 | 3.99e-01 | 78.0% | 91.3% |
| 1pg2A01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.68 | 56.0 | 4.55e-01 | 85.0% | 92.5% |
| 4g6zA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.67 | 55.0 | 4.71e-01 | 84.5% | 98.3% |
| 2csxA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.66 | 52.0 | 5.06e-01 | 81.5% | 100.0% |
| 1li5B01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.66 | 53.0 | 4.85e-01 | 83.5% | 100.0% |
| 1wkbA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.65 | 51.0 | 3.91e-01 | 82.0% | 93.7% |
| 3sp1A01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.64 | 54.0 | 4.88e-01 | 88.0% | 99.6% |
| 3c8zA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.63 | 53.0 | 4.49e-01 | 88.5% | 95.3% |
| 1vjtA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.61 | 34.0 | 4.35e-01 | 76.0% | 93.1% |
| 1ccwB01 | 3.20.20.240 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Methylmalonyl-CoA mutase | 0.55 | 47.0 | 3.61e-01 | 89.0% | 97.1% |
| 4wnyA00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.52 | 34.0 | 4.20e-01 | 80.5% | 100.0% |
| 1irxA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.52 | 44.0 | 4.25e-01 | 87.5% | 99.6% |
| 6hcdD00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.52 | 34.0 | 4.09e-01 | 79.0% | 98.5% |
| 3fdxA00 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.51 | 32.0 | 4.00e-01 | 80.0% | 100.0% |
| 3tnjA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.51 | 31.0 | 3.93e-01 | 80.0% | 100.0% |
| 3a04A01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.50 | 45.0 | 4.20e-01 | 96.5% | 99.2% |
| 1qrsA05 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.50 | 31.0 | 3.90e-01 | 76.0% | 100.0% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3197713 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.87 | 81.0 | 6.49e-01 | 96.5% | 99.1% |
| 4927277 | 2005.1.1.17 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1f | 0.73 | 57.0 | 4.77e-01 | 80.0% | 100.0% |
| None | — | 0.70 | 62.0 | 4.97e-01 | 92.5% | 88.9% | |
| 4169393 | 2005.1.1.17 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1f | 0.70 | 63.0 | 4.53e-01 | 94.0% | 63.7% |
| 3603442 | 101.8.1.1 ↗ | alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1f,Anticodon_2 | 0.70 | 61.0 | 4.38e-01 | 91.5% | 61.5% |
| 5055270 | 2005.1.1.17 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1f | 0.69 | 48.0 | 4.18e-01 | 70.0% | 100.0% |
| 5023100 | 2005.1.1.17 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1f | 0.69 | 62.0 | 4.91e-01 | 94.0% | 91.3% |
| 5072682 | 101.8.1.4 ↗ | alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1f | 0.69 | 60.0 | 4.32e-01 | 92.0% | 62.8% |
| 5014374 | 2005.1.1.17 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1f | 0.68 | 60.0 | 4.33e-01 | 92.0% | 62.5% |
| 3373909 | 140.1.1.8 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1g,Anticodon_3 | 0.67 | 55.0 | 3.91e-01 | 85.0% | 57.3% |
| 3834488 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.67 | 55.0 | 3.71e-01 | 85.0% | 46.9% |
| 5079099 | 101.8.1.4 ↗ | alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › tRNA-synt_1f | 0.67 | 59.0 | 4.22e-01 | 92.0% | 63.9% |
| 3923356 | 300.1.1.9 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › MIT_C | 0.59 | 41.0 | 4.33e-01 | 90.0% | 78.9% |
| 3959101 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.54 | 35.0 | 4.26e-01 | 77.0% | 97.0% |
| 3969383 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.54 | 35.0 | 4.28e-01 | 74.0% | 100.0% |
| 5041492 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.53 | 34.0 | 4.22e-01 | 82.0% | 100.0% |
| 4961826 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.53 | 33.0 | 4.15e-01 | 79.0% | 100.0% |
| 4961979 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.52 | 35.0 | 4.11e-01 | 84.0% | 95.0% |
| 4980850 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.52 | 41.0 | 3.37e-01 | 81.0% | 100.0% |
| 2391911 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.52 | 34.0 | 4.09e-01 | 79.0% | 98.5% |
| 1260958 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.50 | 35.0 | 4.02e-01 | 81.5% | 92.9% |
| 4957334 | 2005.1.1.3 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp | 0.50 | 32.0 | 3.91e-01 | 76.0% | 100.0% |
D2
medium
residues 85-106_168-230
Domain cluster:
representative
CATH (31)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1inlC02 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.63 | 41.0 | 4.65e-01 | 84.7% | 89.1% |
| 1iy9A02 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.61 | 36.0 | 4.41e-01 | 81.2% | 96.2% |
| 1gutA00 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.61 | 37.0 | 4.13e-01 | 80.0% | 77.6% |
| 2cmgA01 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.61 | 35.0 | 4.31e-01 | 78.8% | 94.1% |
| 3o4fC01 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.61 | 35.0 | 4.33e-01 | 80.0% | 96.1% |
| 1uirA01 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.60 | 35.0 | 4.34e-01 | 91.8% | 96.2% |
| 2o07A01 | 2.30.140.10 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain | 0.59 | 36.0 | 4.22e-01 | 91.8% | 88.1% |
| 1b9mA03 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.58 | 37.0 | 4.07e-01 | 83.5% | 77.5% |
| 3kztA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 43.0 | 3.74e-01 | 80.0% | 77.3% |
| 2x5gA00 | 3.30.720.60 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.57 | 33.0 | 3.26e-01 | 84.7% | 52.7% |
| 4gzvA00 | 2.40.128.490 | Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14869 family, DUF4488 | 0.57 | 40.0 | 3.38e-01 | 72.9% | 59.7% |
| 1lomA00 | 2.30.60.10 | Mainly Beta › Roll › HIV-inactivating Protein, Cyanovirin-n › Cyanovirin-N | 0.55 | 34.0 | 3.20e-01 | 74.1% | 51.5% |
| 3c4bA02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.55 | 33.0 | 3.60e-01 | 78.8% | 74.6% |
| 3fssA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 39.0 | 3.98e-01 | 82.4% | 75.6% |
| 4agiA00 | 2.120.10.70 | Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin | 0.55 | 41.0 | 2.80e-01 | 81.2% | 93.9% |
| 2w7qB00 | 2.50.20.10 | Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX | 0.54 | 39.0 | 3.11e-01 | 76.5% | 52.2% |
| 8bddA02 | 2.70.98.70 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.54 | 39.0 | 2.63e-01 | 76.5% | 95.3% |
| 4nyqA00 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.54 | 39.0 | 3.24e-01 | 76.5% | 62.7% |
| 1iucA00 | 2.120.10.70 | Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin | 0.54 | 43.0 | 2.93e-01 | 87.1% | 94.9% |
| 7byjA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 41.0 | 3.97e-01 | 83.5% | 73.7% |
| 8axiA01 | 2.120.10.10 | Mainly Beta › 6 Propeller › Neuraminidase › | 0.53 | 41.0 | 2.70e-01 | 82.4% | 81.2% |
| 2p4oA01 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.53 | 38.0 | 2.60e-01 | 74.1% | 89.0% |
| 6aqgA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.53 | 41.0 | 3.53e-01 | 84.7% | 79.4% |
| 6gbuD00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.53 | 36.0 | 4.01e-01 | 71.8% | 96.9% |
| 5tgnA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 39.0 | 3.58e-01 | 78.8% | 81.7% |
| 3ge2A00 | 2.40.128.50 | Mainly Beta › Beta Barrel › Lipocalin › | 0.51 | 35.0 | 3.48e-01 | 70.6% | 80.9% |
| 1tg0A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.51 | 34.0 | 3.79e-01 | 70.6% | 92.4% |
| 2db2A01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.51 | 33.0 | 3.28e-01 | 96.5% | 60.6% |
| 4emoC00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.51 | 38.0 | 3.47e-01 | 80.0% | 66.4% |
| 6htnA01 | 2.120.10.70 | Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin | 0.51 | 38.0 | 3.26e-01 | 92.9% | 49.6% |
| 1aqcB00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.50 | 34.0 | 3.06e-01 | 70.6% | 52.5% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5044394 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.73 | 39.0 | 5.17e-01 | 74.1% | 100.0% |
| 5044391 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.70 | 39.0 | 5.02e-01 | 78.8% | 96.0% |
| 4966092 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.69 | 38.0 | 3.35e-01 | 83.5% | 37.1% |
| 3582026 | 5.1.10.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed | 0.67 | 32.0 | 3.35e-01 | 88.2% | 47.5% |
| 3987332 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.63 | 37.0 | 4.49e-01 | 91.8% | 90.9% |
| 3578208 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 39.0 | 4.59e-01 | 88.2% | 98.2% |
| 3687369 | 4.1.1.225 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF7025 | 0.62 | 42.0 | 4.03e-01 | 70.6% | 79.0% |
| 5041849 | 3699.1.1.1 ↗ | beta meanders › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermidine synthase tetramerisation domain › Spermine_synt_N | 0.60 | 35.0 | 4.21e-01 | 78.8% | 89.1% |
| 4956661 | 3504.3.1.1 ↗ | beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N | 0.60 | 43.0 | 3.60e-01 | 75.3% | 66.9% |
| 4026274 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 45.0 | 3.82e-01 | 81.2% | 92.1% |
| 5039311 | 3504.3.1.1 ↗ | beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N | 0.58 | 42.0 | 3.45e-01 | 75.3% | 66.7% |
| 3891230 | 5.1.5.43 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WDR93 | 0.58 | 46.0 | 2.79e-01 | 83.5% | 85.0% |
| 3228776 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.57 | 42.0 | 2.85e-01 | 77.6% | 32.2% |
| 3236929 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.56 | 41.0 | 3.08e-01 | 76.5% | 49.8% |
| 3508327 | 5.1.4.265 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_WDR3_1st | 0.56 | 44.0 | 2.88e-01 | 85.9% | 96.3% |
| 3959531 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 42.0 | 4.59e-01 | 82.4% | 100.0% |
| 3176175 | 5.1.4.250 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF2415 | 0.54 | 46.0 | 2.99e-01 | 91.8% | 33.1% |
| 4058734 | 218.1.1.8 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA | 0.54 | 32.0 | 3.12e-01 | 96.5% | 52.6% |
| 3887951 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.54 | 35.0 | 3.20e-01 | 96.5% | 48.7% |
| 4423214 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.53 | 34.0 | 3.23e-01 | 96.5% | 53.3% |
| 3921266 | 5.1.4.37 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 | 0.52 | 43.0 | 2.71e-01 | 94.1% | 35.9% |
| 3915668 | 330.1.1.19 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DSRM_2 | 0.51 | 33.0 | 3.31e-01 | 96.5% | 62.2% |
| 3970416 | 2003.1.2.24 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 | 0.51 | 36.0 | 2.47e-01 | 74.1% | 32.8% |
| 5040875 | 331.3.1.11 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 | 0.50 | 38.0 | 3.15e-01 | 81.2% | 83.2% |
| 4049235 | 4099.1.1.2 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spindle_Spc25 | 0.50 | 35.0 | 3.43e-01 | 72.9% | 88.4% |
| 3784764 | 5.1.4.169 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd | 0.50 | 40.0 | 2.73e-01 | 89.4% | 95.1% |