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NC_047805.1__YP_009788903.1__HOR56_gp02__00002
Bact-VirNC_047805.1__YP_009788903.1__HOR56_gp02__00002
Identity
- Accession:
- NC_047805 ↗
- Kingdom:
- phage
Quality
84.8
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Autographivirales›
Autonotataviridae›
Pokrovskaiavirus›
Yersinia_phage_fHe-Yen3-01
TaxID: 1932893
Cluster
View cluster (3 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 28-124
Domain cluster:
rep: MZ592920.1__QYW05812.1__X__00012__D101-193
D2
high
residues 136-183
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3k44B00 | 3.30.2450.30 | Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › | 0.70 | 59.0 | 4.34e-01 | 100.0% | 65.0% |
| 4fxxB01 | 6.10.140.1790 | Special › Helix non-globular › Helix Hairpins › | 0.65 | 55.0 | 4.81e-01 | 93.8% | 91.7% |
| 3e22A03 | 1.10.287.600 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.63 | 54.0 | 5.26e-01 | 100.0% | 85.2% |
| 2gf4A00 | 1.20.1270.110 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Uncharacterised protein family UPF0058 | 0.59 | 50.0 | 4.15e-01 | 100.0% | 53.4% |
| 8b6jF01 | 1.10.287.20 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Ubiquinol-cytochrome C reductase hinge domain | 0.57 | 48.0 | 4.25e-01 | 97.9% | 65.7% |
| 2hgkA01 | 1.20.1440.40 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › YqcC-like | 0.56 | 47.0 | 3.69e-01 | 95.8% | 62.9% |
| 1xn8A00 | 1.10.3230.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical protein yqbg › YqbG-like | 0.55 | 46.0 | 3.38e-01 | 95.8% | 44.3% |
| 1lqsL01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.53 | 41.0 | 3.49e-01 | 100.0% | 52.0% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3410597 | 2004.1.1.250 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd | 0.80 | 72.0 | 4.08e-01 | 100.0% | 9.5% |
| 3173473 | 6155.1.1.0 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter | 0.80 | 69.0 | 5.68e-01 | 100.0% | 61.1% |
| 3642338 | 3567.1.1.0 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer | 0.75 | 62.0 | 5.38e-01 | 100.0% | 60.0% |
| 4072766 | 109.4.1.889 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › HAT_Syf1_M | 0.70 | 62.0 | 3.91e-01 | 100.0% | 19.6% |
| 3656598 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.70 | 63.0 | 4.55e-01 | 100.0% | 43.1% |
| 3724722 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.70 | 63.0 | 3.93e-01 | 100.0% | 20.8% |
| 5047538 | 159.1.1.0 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › Hypothetical protein AF_0060 | 0.69 | 59.0 | 4.57e-01 | 100.0% | 50.0% |
| 3692753 | 5086.1.1.12 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › Uds1 | 0.62 | 54.0 | 3.82e-01 | 97.9% | 48.7% |
| 3532514 | 148.1.3.19 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_3 | 0.62 | 45.0 | 3.39e-01 | 77.1% | 42.9% |
| 3698320 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.60 | 52.0 | 3.32e-01 | 95.8% | 34.5% |
| 3483223 | 109.21.1.3 ↗ | alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Sec16_C | 0.59 | 52.0 | 2.95e-01 | 100.0% | 10.1% |
| 3970898 | 6119.1.1.0 ↗ | alpha bundles › Helical bundle domain in CusB › Helical bundle domain in CusB › Helical bundle domain in CusB | 0.58 | 48.0 | 4.73e-01 | 89.6% | 94.0% |
| 3716512 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.57 | 46.0 | 2.77e-01 | 100.0% | 11.2% |
| 3277377 | 2484.1.1.6 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FGGY_N | 0.53 | 49.0 | 2.94e-01 | 100.0% | 52.5% |