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NC_047811.1__YP_009789246.1__HOR62_gp07__00007

Bact-Vir

NC_047811.1__YP_009789246.1__HOR62_gp07__00007

Identity

Accession:
NC_047811 ↗
Kingdom:
phage

Quality

84.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autoscriptoviridae› Drulisvirus› Klebsiella_phage_vB_KpnP_KpV74

TaxID: 1933773

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-59
PDB
Domain cluster: representative
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1igqB00 2.30.30.150 Mainly Beta › Roll › SH3 type barrels. › KorB, C-terminal domain 0.65 51.0 5.16e-01 100.0% 87.7%
1sf9A02 2.30.30.340 Mainly Beta › Roll › SH3 type barrels. › Hypothetical protein YfhH like domains 0.64 47.0 4.75e-01 94.6% 85.2%
2af5A01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.63 47.0 4.76e-01 82.1% 83.3%
2b3yA05 3.20.19.10 Alpha Beta › Alpha-Beta Barrel › Aconitase; domain 4 › Aconitase, domain 4 0.63 45.0 3.05e-01 78.6% 91.9%
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.61 50.0 4.26e-01 94.6% 63.2%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 46.0 4.85e-01 91.1% 100.0%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 48.0 4.32e-01 94.6% 74.1%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.58 43.0 4.07e-01 94.6% 65.8%
3obwA02 3.30.420.60 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › eRF1 domain 2 0.58 44.0 3.55e-01 85.7% 89.8%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 41.0 4.08e-01 96.4% 75.0%
3zuaA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.57 47.0 3.75e-01 100.0% 47.3%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.57 42.0 4.33e-01 92.9% 92.3%
3b79A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.57 45.0 3.74e-01 100.0% 44.8%
6o5cA02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.57 45.0 4.17e-01 92.9% 86.8%
2k4yA00 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.56 47.0 4.18e-01 100.0% 83.7%
3u1wA01 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 43.0 3.10e-01 87.5% 27.3%
7fh5A01 2.60.120.330 Mainly Beta › Sandwich › Jelly Rolls › B-lactam Antibiotic, Isopenicillin N Synthase; Chain 0.56 41.0 2.68e-01 80.4% 44.3%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.56 39.0 3.37e-01 94.6% 43.1%
1nnxA00 2.40.50.200 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Bacterial OB-fold 0.55 38.0 3.29e-01 80.4% 43.0%
6e55A01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.55 45.0 4.25e-01 100.0% 98.6%
2lqkA00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.55 43.0 4.13e-01 94.6% 82.9%
2m6pA00 2.20.28.270 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › RNA polymerase-binding protein A 0.55 36.0 4.00e-01 96.4% 84.8%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.54 44.0 3.65e-01 94.6% 55.0%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 40.0 3.92e-01 94.6% 75.0%
4xtvB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 40.0 4.14e-01 94.6% 97.9%
6pqmA01 2.60.260.20 Mainly Beta › Sandwich › HSP40/DNAj peptide-binding domain › Urease metallochaperone UreE, N-terminal domain 0.54 39.0 3.85e-01 82.1% 100.0%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 38.0 3.80e-01 85.7% 73.8%
1awoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.52 40.0 4.02e-01 89.3% 100.0%
2ej9A02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.52 38.0 3.98e-01 89.3% 93.9%
1kmdA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 37.0 2.96e-01 75.0% 67.5%
1fu1A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.52 40.0 3.26e-01 87.5% 69.5%
1g29102 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.52 35.0 3.71e-01 82.1% 88.9%
2eayB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 37.0 3.83e-01 92.9% 95.9%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.51 41.0 4.01e-01 98.2% 92.3%
3fvqA03 2.40.50.470 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.50 33.0 3.31e-01 80.4% 63.8%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3900825 593.1.1.1 ↗ alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like › Cpn60_TCP1 0.70 51.0 3.21e-01 94.6% 15.0%
4101502 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.65 50.0 5.12e-01 92.9% 90.7%
3436022 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.64 48.0 4.85e-01 98.2% 85.5%
3302818 4.1.1.236 ↗ beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.64 49.0 4.93e-01 96.4% 87.3%
5017637 4.1.1.458 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2098 0.64 46.0 4.66e-01 92.9% 78.2%
4583465 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.64 46.0 4.79e-01 92.9% 88.0%
4957888 4.1.1.458 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2098 0.64 48.0 4.71e-01 96.4% 76.7%
4420340 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 50.0 4.98e-01 96.4% 86.7%
3948255 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 53.0 4.13e-01 100.0% 42.3%
4534931 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.63 46.0 4.26e-01 94.6% 60.0%
4974669 4.1.1.458 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2098 0.63 47.0 4.05e-01 96.4% 51.1%
4170351 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.62 45.0 4.19e-01 94.6% 60.0%
4053957 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.62 45.0 4.67e-01 94.6% 90.0%
4169657 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.62 45.0 4.66e-01 94.6% 90.0%
3708283 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 50.0 4.48e-01 94.6% 85.9%
3485965 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 48.0 4.76e-01 96.4% 83.3%
4943724 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.61 49.0 3.06e-01 92.9% 74.9%
4252943 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.60 43.0 4.47e-01 92.9% 88.0%
3675341 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.60 44.0 4.48e-01 98.2% 85.5%
3174977 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.60 52.0 4.44e-01 100.0% 85.3%
4061621 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 50.0 3.56e-01 100.0% 29.2%
3510526 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 45.0 4.57e-01 94.6% 89.1%
5001589 4.1.1.14 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.60 51.0 4.30e-01 100.0% 64.0%
3941004 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 44.0 4.13e-01 96.4% 68.8%
4968949 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.57 44.0 3.47e-01 87.5% 91.2%
3194888 4026.1.1.0 ↗ a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.57 47.0 3.54e-01 100.0% 44.4%
3251443 4026.1.1.0 ↗ a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.57 47.0 3.78e-01 100.0% 71.2%
4959053 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 40.0 3.84e-01 78.6% 64.3%
4342488 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 40.0 3.99e-01 94.6% 74.6%
4585317 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.56 40.0 4.04e-01 94.6% 81.8%
4385345 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.56 40.0 4.11e-01 92.9% 90.0%
4936291 4.1.1.487 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7205 0.56 46.0 4.43e-01 100.0% 80.0%
5049033 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.55 43.0 4.06e-01 92.9% 89.3%
4058919 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.55 40.0 4.13e-01 92.9% 92.0%
4432330 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.55 40.0 4.11e-01 92.9% 92.0%
3604145 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 44.0 4.30e-01 100.0% 81.7%
3281422 2003.1.2.91 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like, NAD_binding_8, Pyr_redox_3 0.55 45.0 2.68e-01 94.6% 70.0%
4336500 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.55 40.0 4.07e-01 92.9% 85.5%
4029082 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 38.0 3.98e-01 92.9% 88.0%
3582226 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.54 44.0 3.12e-01 98.2% 70.0%
4980907 2003.1.3.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain 0.54 42.0 3.11e-01 94.6% 62.7%
5066701 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 37.0 4.27e-01 94.6% 100.0%
3845796 2.1.1.37 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_NTP_bind 0.54 40.0 3.44e-01 78.6% 69.5%
4000280 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 40.0 4.04e-01 100.0% 89.1%
4668201 4.1.1.175 ↗ beta barrels › SH3 › SH3 › SH3 › MSSS 0.54 38.0 3.92e-01 89.3% 88.0%
1567587 2.4.1.1 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.53 35.0 3.36e-01 80.4% 54.9%
2516752 2.1.1.32 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TIP49 0.53 39.0 3.87e-01 82.1% 79.3%
3586487 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 38.0 3.46e-01 94.6% 54.1%
4985279 319.1.1.4 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 0.53 37.0 3.38e-01 76.8% 67.5%
5001903 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 40.0 3.82e-01 100.0% 71.4%
5061114 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.52 42.0 2.66e-01 92.9% 42.3%
4215371 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.51 36.0 3.24e-01 78.6% 53.3%
4973749 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 39.0 3.68e-01 89.3% 70.0%