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NC_047812.1__YP_009789336.1__HOR63_gp44__00041

Bact-Vir

NC_047812.1__YP_009789336.1__HOR63_gp44__00041

Identity

Accession:
NC_047812 ↗
Kingdom:
phage

Quality

57.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Drexlerviridae› Loudonvirus› Escherichia_phage_vB_EcoS_CEB_EC3a

TaxID: 1933774

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 81-142
PDB
Domain cluster: rep: KC821620.1__AGO48571.1__Phi18-3_gp059__00059__D7-69
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3uk3D02 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.76 36.0 4.65e-01 79.0% 96.4%
2lvhA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.69 44.0 4.98e-01 100.0% 91.1%
4cgyA03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.59 51.0 4.09e-01 100.0% 94.5%
1i7dA03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.57 50.0 3.89e-01 100.0% 95.7%
1ykdB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.55 43.0 3.08e-01 87.1% 98.9%
1c77B00 3.10.20.130 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.54 37.0 3.04e-01 100.0% 35.2%
1t6eX01 2.40.70.10 Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases 0.54 46.0 3.43e-01 100.0% 98.9%
1mc0A01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.52 39.0 2.96e-01 83.9% 100.0%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4133771 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.77 38.0 4.66e-01 83.9% 75.0%
3429387 386.1.1.6 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › ARS2 0.76 40.0 4.62e-01 83.9% 68.9%
3839740 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.66 59.0 4.50e-01 100.0% 97.1%
3972097 304.14.1.0 ↗ a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) 0.65 58.0 5.42e-01 98.4% 100.0%
5042268 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.61 55.0 4.45e-01 100.0% 100.0%
3416023 7523.1.1.0 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.59 51.0 4.25e-01 100.0% 98.2%
3964707 2006.1.3.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain 0.59 42.0 2.87e-01 100.0% 20.4%
3415017 7523.1.1.0 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.58 51.0 4.18e-01 100.0% 96.5%
3831913 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.58 51.0 3.98e-01 100.0% 94.8%
3595967 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.58 47.0 3.22e-01 100.0% 27.9%
3940525 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 39.0 2.79e-01 83.9% 96.0%
3476250 10.32.1.2 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C 0.50 39.0 2.90e-01 100.0% 29.5%
D2 medium residues 1-65
PDB