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NC_047827.1__YP_009790488.1__HOR78_gp03__00003

Bact-Vir

NC_047827.1__YP_009790488.1__HOR78_gp03__00003

Identity

Accession:
NC_047827 ↗
Kingdom:
phage

Quality

80.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autotranscriptaviridae› Ghunavirus› Pseudomonas_phage_KNP

TaxID: 2783802

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-75
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2x0qA01 3.30.310.280 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.67 46.0 3.80e-01 71.6% 90.2%
2uuxA01 4.10.410.10 Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain 0.62 32.0 4.10e-01 86.5% 100.0%
3ktaA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 42.0 3.29e-01 70.3% 76.8%
1wloA00 3.90.1010.10 Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › 0.59 49.0 4.04e-01 93.2% 55.1%
2hhiA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.58 36.0 3.08e-01 82.4% 38.1%
2ff4A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 52.0 4.71e-01 100.0% 77.8%
5jenA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.57 41.0 3.59e-01 85.1% 50.5%
3cygA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.56 42.0 3.55e-01 85.1% 48.7%
3h3lC00 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.55 44.0 3.21e-01 90.5% 73.5%
4epkB00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.54 47.0 3.14e-01 100.0% 97.0%
3kfwX01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 40.0 3.99e-01 79.7% 77.3%
3fbuA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 47.0 3.67e-01 100.0% 71.1%
1a2tA00 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 37.0 3.02e-01 71.6% 65.2%
3vwcA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 38.0 3.14e-01 79.7% 97.3%
1h30A01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 41.0 2.95e-01 86.5% 43.3%
3c26A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 43.0 3.04e-01 100.0% 79.0%
2mtzA02 2.40.440.10 Mainly Beta › Beta Barrel › L,D-transpeptidase catalytic domain-like › L,D-transpeptidase catalytic domain-like 0.50 39.0 3.40e-01 86.5% 97.5%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4636242 101.35.1.37 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › FlgI 0.70 50.0 4.92e-01 100.0% 71.4%
3520759 2004.1.1.442 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21 0.69 47.0 3.44e-01 70.3% 37.4%
2641735 2004.1.1.87 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N 0.67 47.0 3.50e-01 73.0% 38.0%
5048989 109.4.1.3619 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_TT21_C 0.64 46.0 3.00e-01 90.5% 19.1%
1295901 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.63 41.0 3.34e-01 81.1% 36.8%
3968490 2484.6.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Periplasmic domain of ExbD/TolR › Periplasmic domain of ExbD/TolR › ExbD 0.61 43.0 4.13e-01 91.9% 63.5%
4468976 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.60 44.0 2.98e-01 78.4% 34.5%
4256135 6129.1.1.1 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.60 48.0 3.62e-01 89.2% 40.0%
4176398 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.60 46.0 3.12e-01 82.4% 37.5%
3516397 6129.1.1.1 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.59 47.0 3.57e-01 89.2% 40.5%
3885988 604.5.1.0 ↗ alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) 0.59 48.0 3.62e-01 90.5% 86.5%
4274495 246.3.1.2 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › DNase I-like › DNase I-like › RNase_E_G 0.59 52.0 4.44e-01 100.0% 87.5%
5010212 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.58 41.0 3.34e-01 74.3% 45.2%
3216869 6129.1.1.1 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.57 44.0 3.31e-01 85.1% 35.9%
3979711 252.2.1.6 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_2 0.57 37.0 3.94e-01 83.8% 75.4%
4976626 3714.1.1.0 ↗ a+b two layers › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain 0.57 47.0 3.37e-01 93.2% 30.2%
167906 4321.1.1.2 ↗ a+b two layers › Peptidoglycan deacetylase N-terminal noncatalytic region › Peptidoglycan deacetylase N-terminal noncatalytic region › Peptidoglycan deacetylase N-terminal noncatalytic region › DUF3298,PdaC 0.57 41.0 2.99e-01 85.1% 27.0%
3798829 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.57 48.0 3.41e-01 93.2% 61.3%
4952130 3714.1.1.1 ↗ a+b two layers › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › LonC_helical 0.56 46.0 3.32e-01 93.2% 29.6%
3627795 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 46.0 4.45e-01 89.2% 78.8%
5054916 2002.1.1.94 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_42 0.56 48.0 2.96e-01 100.0% 51.1%
5013855 327.7.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like 0.55 49.0 4.42e-01 98.6% 85.0%
None — 0.55 45.0 3.34e-01 94.6% 39.5%
None — 0.54 45.0 3.23e-01 91.9% 37.3%
4411256 2004.1.1.80 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Cytidylate_kin 0.53 47.0 3.31e-01 98.6% 67.5%
4254813 2004.1.1.80 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Cytidylate_kin 0.52 46.0 3.27e-01 98.6% 69.1%
3223252 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.52 41.0 2.91e-01 90.5% 32.3%
2611885 2002.1.1.254 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › GH5_mannosidase 0.51 46.0 3.07e-01 100.0% 40.8%