←Back to structures
NC_047845.1__YP_009791798.1__HOR96_gp12__00012
Bact-VirNC_047845.1__YP_009791798.1__HOR96_gp12__00012
Identity
- Accession:
- NC_047845 ↗
- Kingdom:
- phage
Quality
79.2
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Autographivirales›
Atuphduovirus›
Agrobacterium_phage_Atu_ph02
TaxID: 2024261
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-168
Domain cluster:
rep: IMGVR_UViG_3300025319_000099-3300025319-Ga0209520_100003741__DFULL
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4uw9A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.66 | 23.0 | 3.23e-01 | 81.0% | 61.4% |
| 6ywnA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.61 | 40.0 | 4.83e-01 | 71.2% | 100.0% |
| 2o7gA00 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.61 | 28.0 | 3.76e-01 | 92.0% | 79.5% |
| 6iw6A02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.61 | 40.0 | 4.79e-01 | 73.0% | 100.0% |
| 3upsA00 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.58 | 36.0 | 4.29e-01 | 87.1% | 91.7% |
| 3mcrA00 | 3.30.460.80 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit | 0.58 | 40.0 | 4.16e-01 | 70.6% | 74.0% |
| 4s3nA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.57 | 40.0 | 4.20e-01 | 71.2% | 88.4% |
| 3hj4A02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.57 | 43.0 | 4.71e-01 | 78.5% | 99.2% |
| 2p0tA02 | 1.10.60.30 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › PSPTO4464-like domains | 0.57 | 21.0 | 3.10e-01 | 87.7% | 75.0% |
| 1e8oD00 | 3.30.720.10 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 | 0.54 | 21.0 | 3.03e-01 | 78.5% | 73.7% |
| 1knyA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.50 | 36.0 | 4.05e-01 | 89.6% | 96.0% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3788678 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.63 | 48.0 | 3.86e-01 | 78.5% | 66.0% |
| 3679716 | 316.1.1.36 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central | 0.63 | 46.0 | 4.50e-01 | 77.3% | 70.1% |
| 3782486 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.62 | 47.0 | 4.22e-01 | 78.5% | 84.4% |
| 3695136 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.62 | 47.0 | 4.17e-01 | 78.5% | 80.3% |
| 3174305 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.62 | 47.0 | 3.41e-01 | 79.8% | 54.1% |
| 3259877 | 316.1.1.36 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central | 0.61 | 47.0 | 4.32e-01 | 79.1% | 64.4% |
| 3786092 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.61 | 46.0 | 3.57e-01 | 78.5% | 53.8% |
| 1514625 | 316.1.1.20 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › OAS1_C | 0.61 | 46.0 | 4.41e-01 | 77.3% | 90.7% |
| 4030472 | 316.1.1.36 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central | 0.60 | 40.0 | 3.80e-01 | 75.5% | 56.8% |
| 3714496 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.60 | 42.0 | 4.03e-01 | 72.4% | 63.0% |
| 3460911 | 316.1.1.36 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central | 0.59 | 48.0 | 4.55e-01 | 86.5% | 84.1% |
| 3631215 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.58 | 42.0 | 3.96e-01 | 75.5% | 83.0% |
| 3789145 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.58 | 48.0 | 3.70e-01 | 87.7% | 61.5% |
| 2426852 | 316.1.1.36 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › MTPAP-like_central | 0.58 | 44.0 | 4.37e-01 | 79.1% | 77.6% |
| 3787843 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.57 | 48.0 | 3.61e-01 | 89.0% | 61.3% |
| 3270745 | 316.1.1.25 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Nrap_D4 | 0.57 | 42.0 | 4.16e-01 | 75.5% | 89.4% |
| 3788383 | 316.1.1.14 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › LicD | 0.57 | 47.0 | 3.41e-01 | 87.7% | 60.0% |
| 3175510 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.57 | 47.0 | 3.99e-01 | 87.7% | 89.8% |
| 3612607 | 316.1.1.25 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Nrap_D4 | 0.57 | 42.0 | 4.33e-01 | 77.3% | 98.7% |
| 4955536 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.57 | 42.0 | 3.78e-01 | 81.6% | 56.4% |
| 3457724 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.56 | 45.0 | 4.30e-01 | 89.6% | 72.6% |
| 3724523 | 4121.1.1.7 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › PF26616 | 0.56 | 43.0 | 3.36e-01 | 80.4% | 58.3% |
| 4958430 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.55 | 44.0 | 3.88e-01 | 84.0% | 80.8% |
| 3248847 | 316.1.1.13 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RelA_SpoT | 0.55 | 46.0 | 4.54e-01 | 92.0% | 93.9% |
| 3734369 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.54 | 42.0 | 3.41e-01 | 80.4% | 58.4% |
| 4171840 | 316.1.1.5 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › RsfS | 0.54 | 44.0 | 4.40e-01 | 92.0% | 84.8% |
| 3589790 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.53 | 42.0 | 3.74e-01 | 82.8% | 58.7% |
| 3282593 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.53 | 38.0 | 3.39e-01 | 94.5% | 50.4% |
| 3640060 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.53 | 42.0 | 3.60e-01 | 84.7% | 71.7% |
| 4852068 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.52 | 29.0 | 3.52e-01 | 71.2% | 86.0% |
| 4890683 | 102.1.3.1 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › PAP/OAS1 substrate-binding domain › PAP_assoc | 0.51 | 38.0 | 3.79e-01 | 77.9% | 91.9% |
| 3688219 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.50 | 44.0 | 3.62e-01 | 94.5% | 69.3% |