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NC_047846.1__YP_009791861.1__HOR97_gp20__00020

Bact-Vir

NC_047846.1__YP_009791861.1__HOR97_gp20__00020

Identity

Accession:
NC_047846 ↗
Kingdom:
phage

Quality

81.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Atuphduovirus› Agrobacterium_phage_Atu_ph03

TaxID: 2024262

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-54
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u78A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 54.0 5.68e-01 98.1% 93.3%
1te2A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.71 60.0 5.53e-01 100.0% 77.8%
3l5kA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.71 62.0 5.69e-01 100.0% 77.9%
1ffyA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.71 59.0 3.45e-01 92.3% 53.5%
4lvpA00 1.10.418.70 Mainly Alpha › Orthogonal Bundle › Actin-binding Protein, T-fimbrin; domain 1 › Intraflagellar transport protein 81, N-terminal domain 0.69 55.0 4.16e-01 88.5% 67.7%
2m4eA00 1.20.120.1930 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Uncharacterised protein PF16691 family 0.68 50.0 4.30e-01 80.8% 68.6%
6qpqB00 1.10.10.580 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E 0.68 60.0 5.16e-01 100.0% 64.2%
3s6jE02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.67 53.0 4.96e-01 100.0% 71.0%
1k78I00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 56.0 5.45e-01 100.0% 87.9%
2q24A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.64 51.0 3.60e-01 100.0% 27.2%
4lg3A02 6.10.20.130 Special › Helix non-globular › Arc Repressor Mutant, subunit A › 0.64 46.0 4.84e-01 80.8% 93.0%
2f33A03 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.64 53.0 4.63e-01 100.0% 72.4%
4dccA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.63 53.0 4.83e-01 100.0% 85.1%
1h99A01 1.10.1790.10 Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain 0.63 49.0 4.08e-01 92.3% 90.4%
3tl4X02 1.10.10.2420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.62 52.0 4.78e-01 100.0% 75.0%
2ymmA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.62 50.0 4.63e-01 98.1% 93.2%
2dbgA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.62 44.0 3.64e-01 78.8% 74.8%
2eggB01 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.62 52.0 3.80e-01 98.1% 88.0%
4h9nC00 1.20.58.2170 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 51.0 3.50e-01 100.0% 28.3%
2da4A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.61 50.0 4.71e-01 100.0% 75.8%
3ol4A02 1.10.10.2390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.61 49.0 4.79e-01 100.0% 86.7%
2om6A02 1.10.150.400 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.60 51.0 4.52e-01 100.0% 74.7%
2b0cA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.60 51.0 4.76e-01 100.0% 98.5%
1ic8A02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.57 47.0 4.33e-01 100.0% 93.2%
1r3dA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.57 45.0 2.99e-01 96.2% 59.1%
3m1tA00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.57 45.0 3.01e-01 100.0% 56.9%
4malA00 1.20.58.2200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.57 38.0 3.64e-01 100.0% 61.0%
3ddhA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.56 46.0 4.12e-01 100.0% 88.9%
2hzdA00 6.10.20.40 Special › Helix non-globular › Arc Repressor Mutant, subunit A › TEA/ATTS domain 0.56 48.0 4.21e-01 100.0% 74.4%
3jyoA01 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.56 46.0 3.47e-01 96.2% 85.6%
4e6nA02 6.10.140.1010 Special › Helix non-globular › Helix Hairpins › 0.56 36.0 3.38e-01 80.8% 53.0%
2pkeA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.56 47.0 4.20e-01 100.0% 89.7%
2a0uB01 1.20.120.420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 0.55 43.0 3.15e-01 88.5% 43.8%
5jolA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.55 47.0 4.14e-01 100.0% 69.5%
3s64A00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.55 45.0 4.03e-01 100.0% 71.6%
1vb3A01 3.90.1380.10 Alpha Beta › Alpha-Beta Complex › threonine synthase, domain 1, chain A › Threonine synthase, N-terminal domain 0.54 46.0 4.02e-01 96.2% 81.5%
2kmfA01 1.20.58.810 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Photosystem II Pbs27 0.54 39.0 3.20e-01 78.8% 74.5%
5ts9B00 1.20.59.10 Mainly Alpha › Up-down Bundle › Chorismate Mutase Domain, subunit A › Chorismate mutase 0.53 47.0 3.29e-01 100.0% 37.3%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1165372 101.1.2.9 ↗ alpha arrays › HTH › HTH › winged helix domain › DNA_topoisoIV 0.82 73.0 5.30e-01 100.0% 42.0%
3594651 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.80 70.0 5.25e-01 100.0% 43.1%
4121977 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.78 65.0 6.44e-01 100.0% 89.1%
3781058 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.77 65.0 6.40e-01 100.0% 89.1%
4339648 101.1.2.852 ↗ alpha arrays › HTH › HTH › winged helix domain › PF27213 0.77 62.0 5.15e-01 94.2% 50.5%
3174958 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.76 63.0 6.25e-01 98.1% 98.2%
5023957 101.1.2.280 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_12 0.74 58.0 5.12e-01 100.0% 57.5%
3230110 101.1.1.264 ↗ alpha arrays › HTH › HTH › Three-helical HTH › SPK 0.72 62.0 4.84e-01 100.0% 52.2%
3425325 101.1.1.138 ↗ alpha arrays › HTH › HTH › Three-helical HTH › GeBP-like_DBD 0.72 63.0 5.36e-01 100.0% 62.4%
4481481 2498.1.1.22 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY 0.71 48.0 3.30e-01 71.2% 22.9%
4979322 101.1.2.140 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_AsnC-type 0.71 56.0 5.07e-01 94.2% 64.3%
4014593 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 58.0 5.71e-01 98.1% 87.3%
3234078 101.1.7.2 ↗ alpha arrays › HTH › HTH › Methylated DNA-protein cysteine methyltransferase-C › SPK 0.71 60.0 4.77e-01 100.0% 47.0%
3492110 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 62.0 5.79e-01 100.0% 86.2%
4978899 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.70 63.0 5.43e-01 100.0% 88.7%
4928013 610.3.1.1 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.69 57.0 4.28e-01 100.0% 38.9%
3174047 195.1.1.0 ↗ alpha complex topology › NusB-like › NusB-like › NusB-like 0.69 59.0 4.52e-01 100.0% 43.2%
3198858 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.69 57.0 5.23e-01 100.0% 70.0%
3884711 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.69 57.0 5.37e-01 100.0% 75.4%
3602476 1091.1.1.1 ↗ alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › Ribosomal_60s 0.68 51.0 5.10e-01 100.0% 80.0%
3325314 101.1.2.10 ↗ alpha arrays › HTH › HTH › winged helix domain › Linker_histone 0.68 58.0 5.30e-01 100.0% 74.3%
3366917 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.66 51.0 5.12e-01 96.2% 85.5%
3935995 101.1.2.127 ↗ alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.65 53.0 4.85e-01 100.0% 68.0%
5035276 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 53.0 4.53e-01 94.2% 56.7%
4988076 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.65 54.0 5.06e-01 100.0% 75.0%
3620979 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.65 54.0 5.35e-01 100.0% 89.1%
3243611 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.65 51.0 5.20e-01 100.0% 92.0%
4942515 610.3.1.1 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.64 53.0 3.81e-01 98.1% 32.4%
4355585 101.1.1.304 ↗ alpha arrays › HTH › HTH › Three-helical HTH › GatB_Yqey 0.64 52.0 5.09e-01 98.1% 90.0%
3933926 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.63 49.0 4.67e-01 100.0% 73.8%
3534466 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.63 51.0 4.84e-01 98.1% 80.0%
4028933 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 51.0 4.76e-01 98.1% 81.4%
3611713 101.1.17.0 ↗ alpha arrays › HTH › HTH › FF domain 0.62 51.0 4.86e-01 100.0% 86.2%
3845947 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 51.0 5.00e-01 100.0% 88.3%
4014609 101.1.1.79 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_ABP1_N 0.62 51.0 4.85e-01 100.0% 76.9%
3906103 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.61 52.0 4.90e-01 100.0% 80.0%
4089375 610.3.1.1 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.61 50.0 3.62e-01 100.0% 32.0%
5047616 610.3.1.1 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.61 51.0 3.68e-01 100.0% 30.6%
5028994 610.3.1.1 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.61 51.0 3.67e-01 100.0% 29.7%
3428283 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.61 51.0 4.95e-01 100.0% 85.0%
4956188 610.3.1.1 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.60 49.0 3.55e-01 100.0% 32.0%
3909922 101.1.1.12 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc3_2 0.60 47.0 4.78e-01 98.1% 98.0%
5002108 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.60 49.0 4.59e-01 100.0% 91.4%
3609939 101.1.1.3 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-binding 0.60 52.0 4.20e-01 100.0% 75.2%
4158083 610.3.1.1 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.60 51.0 3.61e-01 100.0% 30.3%
3712226 101.1.1.67 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_6 0.60 52.0 4.31e-01 100.0% 84.2%
5064744 610.3.1.1 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.60 49.0 3.53e-01 98.1% 32.4%
3607327 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.60 51.0 4.90e-01 100.0% 93.3%
4223433 6102.1.1.1 ↗ alpha arrays › N-terminal domain of segregation and condensation protein A, ScpA › N-terminal domain of segregation and condensation protein A, ScpA › N-terminal domain of segregation and condensation protein A, ScpA › SMC_ScpA 0.60 49.0 3.60e-01 100.0% 55.0%
4971903 1091.1.1.1 ↗ alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › Ribosomal_60s 0.59 45.0 4.13e-01 100.0% 61.3%
4995552 610.3.1.1 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.59 48.0 3.51e-01 100.0% 32.0%
4569442 101.35.1.4 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.59 46.0 4.60e-01 98.1% 87.3%
4938494 610.3.1.1 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.59 48.0 4.03e-01 98.1% 55.0%
4983306 610.3.1.1 ↗ alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain › GatB_Yqey 0.59 48.0 3.46e-01 100.0% 32.0%
None — 0.59 47.0 3.40e-01 96.2% 29.4%
4508258 2498.1.1.22 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › YbeY 0.58 46.0 3.45e-01 94.2% 80.7%
3587597 162.1.1.0 ↗ alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD 0.58 49.0 3.78e-01 98.1% 84.0%
3908865 101.1.2.536 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc3_2 0.58 46.0 4.62e-01 98.1% 89.1%
5055349 2006.1.1.18 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.57 49.0 3.34e-01 100.0% 28.5%
3575287 219.1.1.3 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.56 44.0 3.17e-01 92.3% 35.4%
5012637 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.54 42.0 3.69e-01 86.5% 93.8%
3633346 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.52 41.0 3.67e-01 100.0% 74.4%
3964858 3883.1.1.1 ↗ alpha bundles › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-OH_P_transf 0.52 37.0 2.66e-01 80.8% 56.8%