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NC_047846.1__YP_009791878.1__HOR97_gp37__00037
Bact-VirNC_047846.1__YP_009791878.1__HOR97_gp37__00037
Identity
- Accession:
- NC_047846 ↗
- Kingdom:
- phage
Quality
79.9
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Autographivirales›
Atuphduovirus›
Agrobacterium_phage_Atu_ph03
TaxID: 2024262
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-113
Domain cluster:
rep: NC_027397.1__YP_009153046.1__ACQ41_gp20__00020__D9-117
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03906.21 best | Phage_T7_tail | 40.2 | 4.50e-10 | 100.0% | 79.2% |
D2
high
residues 147-287
Domain cluster:
representative
D3
high
residues 378-429
Domain cluster:
representative
CATH (34)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2q74A01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.81 | 68.0 | 5.07e-01 | 94.2% | 51.2% |
| 4ld1A00 | 2.60.450.20 | Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › | 0.80 | 70.0 | 4.99e-01 | 100.0% | 37.6% |
| 4by2B00 | 2.60.450.20 | Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › | 0.79 | 70.0 | 4.97e-01 | 100.0% | 48.4% |
| 3vsmA03 | 2.60.40.4340 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.75 | 61.0 | 5.04e-01 | 90.4% | 97.9% |
| 3p34A02 | 3.30.1120.30 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain | 0.73 | 63.0 | 5.12e-01 | 96.2% | 59.8% |
| 2fkiA00 | 3.90.1150.30 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › | 0.73 | 55.0 | 4.28e-01 | 82.7% | 61.9% |
| 4g7nA02 | 3.30.1120.130 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.73 | 59.0 | 4.88e-01 | 92.3% | 52.6% |
| 4n9jA02 | 3.30.1120.130 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.73 | 62.0 | 4.94e-01 | 98.1% | 53.3% |
| 2ogqA01 | 3.30.1120.30 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain | 0.71 | 62.0 | 4.72e-01 | 100.0% | 46.0% |
| 2r9yA02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.71 | 54.0 | 3.95e-01 | 84.6% | 72.6% |
| 3pqhA01 | 2.20.220.20 | Mainly Beta › Single Sheet › Glycosyl hydrolase fold › | 0.67 | 57.0 | 5.53e-01 | 98.1% | 93.3% |
| 1y9lA00 | 2.40.128.230 | Mainly Beta › Beta Barrel › Lipocalin › Pilot protein MxiM | 0.64 | 45.0 | 3.66e-01 | 78.8% | 55.5% |
| 3witA00 | 2.20.220.20 | Mainly Beta › Single Sheet › Glycosyl hydrolase fold › | 0.63 | 53.0 | 5.04e-01 | 98.1% | 100.0% |
| 2ymsB00 | 2.40.10.480 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.63 | 44.0 | 3.92e-01 | 73.1% | 95.9% |
| 6gh3A01 | 2.70.98.40 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Glycoside hydrolase, family 65, N-terminal domain | 0.62 | 52.0 | 3.30e-01 | 100.0% | 75.9% |
| 1o7dD01 | 2.70.98.30 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 | 0.62 | 44.0 | 2.90e-01 | 78.8% | 77.4% |
| 5ic7A00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.62 | 51.0 | 3.10e-01 | 90.4% | 50.9% |
| 3vgzC00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.62 | 48.0 | 2.97e-01 | 86.5% | 51.1% |
| 2ymsA00 | 2.40.128.630 | Mainly Beta › Beta Barrel › Lipocalin › | 0.62 | 49.0 | 3.98e-01 | 100.0% | 86.3% |
| 4dapA01 | 2.40.50.580 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.61 | 42.0 | 3.68e-01 | 71.2% | 95.0% |
| 7ufsA01 | 2.70.98.30 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 | 0.61 | 49.0 | 3.19e-01 | 94.2% | 79.7% |
| 1r5mA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.60 | 48.0 | 3.05e-01 | 100.0% | 33.3% |
| 3tu3B01 | 3.30.720.80 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.60 | 41.0 | 3.67e-01 | 71.2% | 56.6% |
| 3dsoA00 | 2.40.10.300 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Copper resistance protein K | 0.56 | 39.0 | 3.61e-01 | 73.1% | 83.3% |
| 1wgeA00 | 3.10.660.10 | Alpha Beta › Roll › Microbial ribonuclease fold › DPH Zinc finger | 0.55 | 38.0 | 3.33e-01 | 71.2% | 51.8% |
| 2ymsC00 | 2.40.10.480 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.55 | 39.0 | 3.61e-01 | 80.8% | 93.3% |
| 3c5mA00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.55 | 43.0 | 2.74e-01 | 100.0% | 48.7% |
| 2fe0A01 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.54 | 39.0 | 3.22e-01 | 80.8% | 98.1% |
| 1b44D00 | 2.40.50.110 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.54 | 39.0 | 3.17e-01 | 78.8% | 69.8% |
| 2mysA01 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.53 | 36.0 | 3.79e-01 | 73.1% | 85.4% |
| 3a9gA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.53 | 40.0 | 2.57e-01 | 92.3% | 51.2% |
| 2dk7A00 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.53 | 35.0 | 3.28e-01 | 73.1% | 50.7% |
| 2jmbA00 | 2.40.128.290 | Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein family Atu4866 | 0.52 | 42.0 | 3.80e-01 | 96.2% | 65.8% |
| 4gp3A03 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.51 | 38.0 | 3.02e-01 | 84.6% | 59.0% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4030652 | 77.3.1.0 ↗ | beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain | 0.81 | 73.0 | 5.16e-01 | 100.0% | 39.3% |
| 3504473 | 77.3.1.0 ↗ | beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain | 0.81 | 72.0 | 4.90e-01 | 100.0% | 32.2% |
| 3764875 | 77.3.1.1 ↗ | beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › Tcp10_C | 0.80 | 72.0 | 4.81e-01 | 100.0% | 36.3% |
| 3703649 | 292.2.1.0 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain | 0.80 | 71.0 | 6.14e-01 | 100.0% | 92.5% |
| 3707862 | 79.1.1.0 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain | 0.79 | 70.0 | 6.09e-01 | 100.0% | 92.5% |
| 3774338 | 292.2.1.6 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › DUF4520 | 0.79 | 69.0 | 5.34e-01 | 96.2% | 62.7% |
| 3471142 | 77.3.1.0 ↗ | beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain | 0.79 | 69.0 | 4.68e-01 | 100.0% | 31.6% |
| 3716389 | 77.3.1.0 ↗ | beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain | 0.78 | 68.0 | 4.09e-01 | 98.1% | 17.7% |
| 1005531 | 12.2.1.2 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Hyaluronate lyase-like, C-terminal domain › Hyaluronate lyase-like, C-terminal domain › Baculo_E66 | 0.77 | 65.0 | 5.28e-01 | 94.2% | 97.9% |
| 3875597 | 77.3.1.0 ↗ | beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain | 0.76 | 66.0 | 3.92e-01 | 100.0% | 21.8% |
| 4609923 | 77.3.1.4 ↗ | beta meanders › open-sided beta-meander › CPAP G-box domain › CPAP G-box domain › PF28998 | 0.76 | 66.0 | 4.92e-01 | 100.0% | 45.2% |
| 4120507 | 292.2.1.1 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box | 0.75 | 63.0 | 5.24e-01 | 96.2% | 68.4% |
| 3884680 | 292.2.1.6 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › DUF4520 | 0.75 | 67.0 | 5.21e-01 | 100.0% | 74.5% |
| 3706670 | 292.2.1.6 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › DUF4520 | 0.72 | 63.0 | 4.97e-01 | 100.0% | 62.7% |
| 3700775 | 292.2.1.0 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain | 0.72 | 59.0 | 4.84e-01 | 92.3% | 69.5% |
| 3806422 | 247.1.1.38 ↗ | a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C | 0.70 | 47.0 | 4.04e-01 | 71.2% | 54.1% |
| 999859 | 79.1.1.12 ↗ | beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Gp138_C | 0.67 | 57.0 | 4.59e-01 | 98.1% | 52.3% |
| 3516622 | 5.1.4.278 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, BING4CT | 0.65 | 47.0 | 2.96e-01 | 78.8% | 38.3% |
| 4995814 | 2.7.1.1 ↗ | beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_base_V | 0.64 | 53.0 | 3.86e-01 | 98.1% | 51.2% |
| 4543988 | 4099.1.1.26 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Kre28 | 0.64 | 53.0 | 4.20e-01 | 96.2% | 65.2% |
| 4606694 | 4099.1.1.26 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Kre28 | 0.63 | 47.0 | 4.09e-01 | 82.7% | 74.7% |
| 3306545 | 331.2.1.8 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › CPSF73-100_C | 0.62 | 48.0 | 4.09e-01 | 84.6% | 67.1% |
| 3326519 | 331.23.1.7 ↗ | a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › CPSF73-100_C | 0.62 | 47.0 | 4.13e-01 | 84.6% | 71.2% |
| 3393936 | 5.1.4.276 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_WDR75_2nd | 0.60 | 49.0 | 3.06e-01 | 100.0% | 39.5% |
| 3781294 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.60 | 47.0 | 2.87e-01 | 88.5% | 32.8% |
| 3601126 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.59 | 44.0 | 2.64e-01 | 84.6% | 43.6% |
| 4193772 | 331.1.1.13 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › CPSF73-100_C | 0.59 | 47.0 | 4.01e-01 | 88.5% | 63.5% |
| 3256679 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.59 | 48.0 | 4.37e-01 | 96.2% | 98.7% |
| 3811678 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.57 | 42.0 | 3.43e-01 | 82.7% | 62.0% |
| 3676249 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.56 | 42.0 | 3.40e-01 | 82.7% | 60.9% |
| 3352593 | 5.1.10.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed | 0.54 | 38.0 | 3.37e-01 | 71.2% | 48.8% |
| 5072965 | 2002.1.1.57 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › URO-D | 0.54 | 40.0 | 2.46e-01 | 82.7% | 73.8% |
| 3569596 | 6.1.1.11 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Fascin | 0.52 | 41.0 | 3.16e-01 | 88.5% | 73.6% |
D4
high
residues 435-502