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NC_047870.1__YP_009793249.1__HOS23_gp07__00007

Bact-Vir

NC_047870.1__YP_009793249.1__HOS23_gp07__00007

Identity

Accession:
NC_047870 ↗
Kingdom:
phage

Quality

80.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Cuernavacavirus› Rhizobium_phage_RHEph09

TaxID: 1220716

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 2-50
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7wq5A01 3.30.730.10 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › AP2/ERF domain 0.74 64.0 6.13e-01 98.0% 86.2%
5vmzA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.74 54.0 5.89e-01 100.0% 97.4%
5suhB01 3.30.70.1710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain 0.72 62.0 4.99e-01 100.0% 86.9%
4r2qA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.72 44.0 3.66e-01 77.6% 34.1%
1v2dA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.66 50.0 3.71e-01 83.7% 66.4%
2phcB01 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.63 51.0 4.45e-01 98.0% 97.6%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 51.0 4.59e-01 100.0% 78.9%
2nu8B02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.60 50.0 4.30e-01 100.0% 83.3%
2pw9C03 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.60 49.0 3.71e-01 100.0% 39.9%
3ol0B00 6.20.90.30 Special › Other non-globular › SH3 type barrels. › 0.59 37.0 3.99e-01 83.7% 75.6%
2yv9A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.58 48.0 3.74e-01 93.9% 80.9%
2rs7A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 48.0 4.28e-01 98.0% 71.6%
5teqA01 3.30.470.110 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › 0.57 47.0 3.16e-01 100.0% 42.3%
4khbC00 2.30.29.210 Mainly Beta › Roll › PH-domain like › FACT complex subunit Spt16p/Cdc68p 0.56 46.0 3.76e-01 100.0% 51.9%
3wnzA02 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.56 46.0 3.93e-01 100.0% 57.6%
3n5oA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.55 46.0 3.85e-01 95.9% 98.9%
2e1mC01 3.30.70.2100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 37.0 3.39e-01 75.5% 77.9%
6dgiA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.53 43.0 4.00e-01 100.0% 83.8%
4p55B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 36.0 2.98e-01 100.0% 37.5%
2b5eA02 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 41.0 3.50e-01 100.0% 77.3%
1e8oA00 3.30.720.10 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 0.51 44.0 3.85e-01 100.0% 64.9%
3rioA01 2.30.24.10 Mainly Beta › Roll › Transcription Regulation, Sacy; Chain A › CAT RNA-binding domain 0.51 41.0 3.79e-01 93.9% 91.2%
ECOD (37)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4112122 386.1.1.81 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF1391 0.86 60.0 6.57e-01 91.8% 90.0%
3164102 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.79 64.0 6.62e-01 100.0% 95.6%
3969097 4325.1.1.0 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.77 63.0 6.28e-01 98.0% 88.0%
3943930 4325.1.1.0 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.74 61.0 6.16e-01 98.0% 92.0%
3588192 4325.1.1.7 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › Arm-DNA-bind_4 0.73 62.0 6.21e-01 95.9% 100.0%
5029920 4100.1.1.3 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox 0.72 61.0 5.60e-01 100.0% 72.3%
4983413 206.1.3.20 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_2 0.71 53.0 3.46e-01 85.7% 26.0%
3239059 4210.1.1.1 ↗ a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.68 58.0 4.46e-01 100.0% 41.7%
4965851 4100.1.1.9 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › DUF7387 0.68 52.0 5.02e-01 98.0% 76.4%
4929701 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.66 57.0 5.40e-01 100.0% 81.7%
3228242 4210.1.1.1 ↗ a+b two layers › WGR domain › WGR domain › WGR domain › WGR 0.66 58.0 4.63e-01 100.0% 63.0%
5075488 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.66 54.0 4.97e-01 100.0% 70.6%
4956534 206.1.3.20 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_2 0.65 52.0 3.53e-01 100.0% 42.2%
5015133 4100.1.1.9 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › DUF7387 0.65 54.0 5.14e-01 100.0% 80.0%
3783961 901.1.1.1 ↗ few secondary structure elements › ADA_N-like domain › ADA_N-like domain › ADA_N-like domain › Ada_Zn_binding 0.65 46.0 4.15e-01 77.6% 75.7%
3454238 220.1.1.78 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_2 0.64 54.0 4.64e-01 100.0% 62.4%
4023749 3012.1.1.10 ↗ a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain › ISN1 0.64 43.0 3.40e-01 71.4% 75.0%
4938267 206.1.3.20 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_2 0.64 54.0 3.64e-01 100.0% 32.5%
3218512 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.63 48.0 3.94e-01 98.0% 42.9%
5036880 330.1.1.35 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › LeuA_dimer 0.62 54.0 4.82e-01 100.0% 75.7%
None — 0.62 53.0 3.46e-01 100.0% 30.2%
3966338 327.16.1.19 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › NRho 0.62 43.0 4.14e-01 73.5% 100.0%
4930766 2492.1.1.7 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.61 53.0 3.92e-01 100.0% 37.8%
5010689 206.1.3.20 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_2 0.60 48.0 3.35e-01 100.0% 42.0%
2469828 206.1.3.20 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_2 0.59 51.0 3.31e-01 100.0% 34.6%
5047755 2492.1.1.7 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.59 50.0 3.68e-01 100.0% 39.3%
3191255 4205.1.1.0 ↗ a+b two layers › SMI1/KNR4-like › SMI1/KNR4-like › SMI1/KNR4-like 0.58 43.0 3.02e-01 85.7% 95.3%
4986209 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 47.0 3.70e-01 100.0% 41.9%
3945340 235.1.1.9 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.55 46.0 3.34e-01 95.9% 32.0%
4028694 306.3.1.0 ↗ a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like 0.55 44.0 4.09e-01 91.8% 92.3%
3495550 605.1.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.53 43.0 3.50e-01 95.9% 53.3%
3472660 358.1.1.1 ↗ a+b complex topology › SRCR-like › SRCR-like › SRCR-like › SRCR 0.53 43.0 3.46e-01 100.0% 80.0%
4947430 206.1.3.21 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK 0.53 43.0 2.96e-01 100.0% 26.0%
5016852 2007.1.3.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.52 46.0 3.16e-01 100.0% 86.3%
3978568 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.50 42.0 3.08e-01 95.9% 94.8%
4873116 358.1.1.3 ↗ a+b complex topology › SRCR-like › SRCR-like › SRCR-like › SRCR_2 0.50 39.0 3.25e-01 93.9% 76.5%
5007897 2002.1.1.102 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP 0.50 43.0 2.89e-01 100.0% 25.5%