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NC_047871.1__YP_009793434.1__QLX42_gp131__00131
Bact-VirNC_047871.1__YP_009793434.1__QLX42_gp131__00131
Identity
- Accession:
- NC_047871 ↗
- Kingdom:
- phage
Quality
72.3
mean pLDDT
Taxonomy
TaxID: 1486414
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-47
Domain cluster:
rep: NC_012530.1__YP_002790789.1__lb338_phage_110__00110__D7-53
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF24040.2 best | DUF7349 | 71.4 | 5.20e-20 | 95.7% | 86.0% |
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2j8gA02 | 2.10.270.10 | Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding | 0.66 | 46.0 | 3.81e-01 | 73.9% | 62.2% |
| 1ji8A01 | 3.30.1420.10 | Alpha Beta › 2-Layer Sandwich › Dissimilatory Siroheme-sulfite Reductase; Chain: A; domain 1 › DsrC protein, N-terminal domain | 0.63 | 52.0 | 5.18e-01 | 93.5% | 91.5% |
| 4bndA02 | 3.30.1240.20 | Alpha Beta › 2-Layer Sandwich › Hypothetical Protein, Haloacid Dehalogenase-like Hydrolase; Chain: A; domain 2 › Eukaryotic phosphomannomutase, cap domain | 0.61 | 48.0 | 3.94e-01 | 93.5% | 81.2% |
| 2v05A02 | 2.10.270.10 | Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding | 0.61 | 42.0 | 2.90e-01 | 73.9% | 27.8% |
| 2g7cB01 | 2.10.270.10 | Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding | 0.61 | 42.0 | 3.82e-01 | 73.9% | 77.3% |
| 2o8mB01 | 2.40.10.120 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.60 | 45.0 | 4.07e-01 | 84.8% | 66.7% |
| 1bwzA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.56 | 39.0 | 2.98e-01 | 78.3% | 74.8% |
| 4py5A01 | 3.30.310.10 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein | 0.55 | 45.0 | 4.02e-01 | 100.0% | 93.1% |
| 3i3wA01 | 3.40.120.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 | 0.54 | 43.0 | 3.12e-01 | 95.7% | 86.1% |
| 3mn8B02 | 2.60.40.1120 | Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain | 0.54 | 45.0 | 3.80e-01 | 100.0% | 89.2% |
| 1yx3A01 | 3.30.1420.10 | Alpha Beta › 2-Layer Sandwich › Dissimilatory Siroheme-sulfite Reductase; Chain: A; domain 1 › DsrC protein, N-terminal domain | 0.53 | 38.0 | 3.91e-01 | 84.8% | 97.6% |
| 3ztvA01 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.52 | 40.0 | 2.44e-01 | 89.1% | 31.2% |
| 6qkgA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.51 | 40.0 | 3.09e-01 | 89.1% | 49.5% |
| 1usgA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.51 | 39.0 | 2.89e-01 | 87.0% | 70.8% |
| 7eu1A02 | 1.10.132.30 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › RNA polymerase Rpb1 funnel domain | 0.50 | 39.0 | 2.91e-01 | 91.3% | 91.8% |
ECOD (14)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4997494 | 3435.1.1.0 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC | 0.62 | 49.0 | 3.24e-01 | 95.7% | 59.1% |
| 2075815 | 3012.1.1.0 ↗ | a+b two layers › Cof C2 cap domain › Cof C2 cap domain › Cof C2 cap domain | 0.61 | 48.0 | 3.89e-01 | 93.5% | 78.0% |
| 4990980 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.59 | 42.0 | 3.48e-01 | 80.4% | 64.2% |
| 4509443 | 4076.3.1.8 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › PSF2_N | 0.57 | 44.0 | 4.10e-01 | 100.0% | 67.7% |
| 3935058 | 292.2.1.5 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › Polo_box_3 | 0.55 | 38.0 | 3.37e-01 | 82.6% | 87.1% |
| 3991841 | 389.1.2.1 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › Sushi | 0.55 | 37.0 | 3.41e-01 | 71.7% | 89.2% |
| 4001115 | 389.1.2.1 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › Sushi | 0.54 | 38.0 | 3.54e-01 | 78.3% | 86.2% |
| 3909169 | 389.1.2.1 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › Sushi | 0.54 | 37.0 | 3.42e-01 | 78.3% | 80.0% |
| 3597190 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 38.0 | 2.24e-01 | 76.1% | 21.7% |
| 3511207 | 389.1.2.1 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › Sushi | 0.54 | 38.0 | 3.29e-01 | 78.3% | 95.0% |
| 3574029 | 389.1.2.0 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain | 0.53 | 36.0 | 3.30e-01 | 71.7% | 87.7% |
| 4291660 | 4076.3.1.7 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › DUF2635 | 0.53 | 39.0 | 3.90e-01 | 100.0% | 85.7% |
| 3231954 | 387.1.1.34 ↗ | few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related › EB | 0.52 | 35.0 | 3.55e-01 | 84.8% | 70.8% |
| 3791590 | 389.1.2.1 ↗ | few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › Sushi | 0.52 | 37.0 | 3.25e-01 | 78.3% | 81.3% |