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NC_047875.1__YP_009793796.1__HOS28_gp13__00013

Bact-Vir

Identity

Accession:: NC_047875 ↗
Kingdom:: phage

Quality

88.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lederbergvirus› Salmonella_phage_UPF_BP1

TaxID: 1912492

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-50

PDB

Domain cluster: representative

CATH (14)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
7fsfA02	3.30.56.80	Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 ›	0.67	51.0	4.67e-01	91.5%	81.2%
2q9rA01	1.20.1590.10	Mainly Alpha › Up-down Bundle › YP_001051499.1 fold like › YP_001051499.1 domain like	0.63	50.0	3.40e-01	93.6%	85.6%
1musA01	1.10.246.40	Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Tn5 transposase; domain 1	0.61	37.0	3.34e-01	85.1%	42.4%
2of5H00	1.10.533.10	Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas	0.61	45.0	3.78e-01	91.5%	68.0%
1imvA02	3.30.497.10	Alpha Beta › 2-Layer Sandwich › Antithrombin; Chain I, domain 2 › Antithrombin, subunit I, domain 2	0.57	43.0	2.87e-01	85.1%	29.6%
1wscA01	3.30.700.20	Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Hypothetical protein ph0010; domain 1	0.55	38.0	2.82e-01	76.6%	48.3%
3m9lA02	1.10.260.80	Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) ›	0.54	40.0	3.94e-01	85.1%	90.2%
3c4aA01	3.50.50.60	Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain	0.53	44.0	2.92e-01	95.7%	92.6%
1v92A00	1.10.8.10	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain	0.53	35.0	3.58e-01	78.7%	71.7%
2vkhA03	1.10.10.1780	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.53	35.0	3.25e-01	83.0%	49.3%
2cwoA01	1.20.58.1200	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RNA silencing suppressor P21, N-terminal domain	0.52	34.0	2.98e-01	72.3%	43.2%
2qhoD00	1.10.8.10	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain	0.52	35.0	3.54e-01	78.7%	67.3%
2hf6A00	3.30.450.60	Alpha Beta › 2-Layer Sandwich › Beta-Lactamase ›	0.52	39.0	2.95e-01	93.6%	36.9%
1y8aA02	1.10.3870.10	Mainly Alpha › Orthogonal Bundle › AF1437-like domain fold › AF1437-like domain superfamily	0.50	39.0	3.18e-01	100.0%	65.5%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3395430	101.1.2.106 ↗	alpha arrays › HTH › HTH › winged helix domain › Tam41_Mmp37	0.65	55.0	3.88e-01	100.0%	75.6%
5013255	518.1.1.1 ↗	alpha arrays › Chemotaxis receptor methyltransferase CheR, N-terminal domain › Chemotaxis receptor methyltransferase CheR, N-terminal domain › Chemotaxis receptor methyltransferase CheR, N-terminal domain › CheR_N	0.63	46.0	4.19e-01	85.1%	55.7%
3351472	101.1.1.292 ↗	alpha arrays › HTH › HTH › Three-helical HTH › RVE6	0.60	42.0	3.84e-01	74.5%	56.9%
3632179	592.2.1.0 ↗	alpha arrays › PWI domain-like › YugE-like › YugE-like	0.58	42.0	3.66e-01	78.7%	97.3%
3178563	605.3.1.0 ↗	alpha duplicates or obligate multimers › ROP-like › Nonstructural protein ns2, Nep, M1-binding domain › Nonstructural protein ns2, Nep, M1-binding domain	0.55	39.0	3.85e-01	76.6%	70.0%
1764926	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.54	38.0	3.79e-01	91.5%	66.7%
4991762	101.1.2.643 ↗	alpha arrays › HTH › HTH › winged helix domain › AAA_assoc_C	0.53	35.0	3.17e-01	72.3%	52.0%
3256378	130.1.1.0 ↗	alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif	0.51	35.0	3.58e-01	95.7%	77.8%