NC_047875.1__YP_009793830.1__HOS28_gp47__00047

Bact-Vir

Identity

69.2 mean pLDDT

Heunggongvirae› Uroviricota› Caudoviricetes› Lederbergvirus› Salmonella_phage_UPF_BP1

TaxID: 1912492

View cluster (2 members)

Download PDB Download Scores JSON

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 199-258_554-614

PDB

Domain cluster: representative

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF26808.1 best	Phage_P22_gp16	29.2	5.10e-07	54.5%	7.1%
PF26808.1	Phage_P22_gp16	53.1	3.10e-14	49.6%	6.5%

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4gouA03	1.20.900.10	Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain	0.55	34.0	2.94e-01	76.0%	38.1%
1foeA01	1.20.900.10	Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain	0.51	36.0	3.06e-01	75.2%	44.5%
6xz3A01	1.20.120.230	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like	0.51	32.0	3.29e-01	74.4%	65.0%
1k90B03	1.20.140.60	Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 ›	0.50	29.0	3.00e-01	94.2%	59.1%

ECOD (5)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3945098	109.4.1.924 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_CcmH_CycH	0.54	27.0	2.96e-01	90.9%	56.2%
4058294	563.1.1.1 ↗	alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP	0.52	32.0	3.17e-01	73.6%	55.6%
3928215	133.1.1.0 ↗	alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain)	0.52	35.0	3.01e-01	75.2%	43.2%
3272467	133.1.1.1 ↗	alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF	0.51	32.0	2.65e-01	75.2%	33.0%
3416161	133.1.1.1 ↗	alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF	0.51	32.0	2.73e-01	76.0%	36.1%

D2 high residues 306-428

PDB

Domain cluster: rep: EU021982.1__ABW90588.1__X__00001__D1-92

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF26808.1 best	Phage_P22_gp16	35.2	7.90e-09	100.0%	17.6%

D3 medium residues 1-53

PDB

Domain cluster: rep: OP377721.1__UWV16687.1__X__00056__D5-52

D4 medium residues 131-177

PDB

D5 medium residues 259-275_467-553

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF26808.1 best	Phage_P22_gp16	29.3	4.90e-07	90.4%	14.6%

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4hr1A00	1.20.1270.410	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.61	37.0	3.56e-01	92.3%	52.5%
4etrB00	1.20.1260.10	Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle	0.61	45.0	4.33e-01	95.2%	67.2%
8e9gD01	1.10.645.10	Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B	0.58	48.0	3.27e-01	91.3%	49.0%
3kavA00	1.20.1270.360	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.57	43.0	4.36e-01	80.8%	94.1%
5oklA01	1.10.246.10	Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 ›	0.54	38.0	3.88e-01	73.1%	99.0%
1yowA00	1.10.565.10	Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor	0.54	45.0	3.51e-01	97.1%	41.7%
3f4mA00	1.20.1440.160	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like	0.52	43.0	3.81e-01	92.3%	79.9%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3399861	150.1.1.0 ↗	alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin	0.63	56.0	5.19e-01	99.0%	83.0%
3637653	3755.3.1.481 ↗	alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › PF30554	0.56	39.0	3.43e-01	97.1%	48.4%
3187864	109.4.1.266 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › XMAP215_CLASP_TOG	0.52	40.0	3.04e-01	81.7%	61.9%