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NC_047880.1__YP_009794202.1__HOS33_gp028__00028
Bact-VirNC_047880.1__YP_009794202.1__HOS33_gp028__00028
Identity
- Accession:
- NC_047880 ↗
- Kingdom:
- phage
Quality
73.0
mean pLDDT
Taxonomy
TaxID: 1983553
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-138
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2rqlA00 | 3.30.160.100 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like | 0.66 | 41.0 | 4.90e-01 | 94.9% | 90.5% |
| 3tqmA00 | 3.30.160.100 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like | 0.66 | 41.0 | 4.95e-01 | 97.1% | 94.4% |
| 2ywqA00 | 3.30.160.100 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like | 0.66 | 41.0 | 4.99e-01 | 97.1% | 96.6% |
| 3l4gC04 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.58 | 41.0 | 3.31e-01 | 71.5% | 84.7% |
| 3mj6A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 30.0 | 3.28e-01 | 90.5% | 59.8% |
| 3vynA01 | 2.60.40.3780 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 24.0 | 3.03e-01 | 81.0% | 65.5% |
| 4q9bA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 28.0 | 3.28e-01 | 81.8% | 67.3% |
| 1lfwA03 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 30.0 | 3.57e-01 | 87.6% | 83.0% |
| 2aehA03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 27.0 | 2.97e-01 | 87.6% | 57.7% |
| 4cbvA02 | 2.40.50.1020 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › LytTr DNA-binding domain | 0.51 | 34.0 | 3.65e-01 | 74.5% | 78.0% |
| 1lqvB00 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.51 | 46.0 | 4.23e-01 | 100.0% | 78.0% |
| 2w59A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 27.0 | 3.11e-01 | 81.8% | 70.0% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5024203 | 330.10.1.0 ↗ | a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain | 0.73 | 36.0 | 4.51e-01 | 70.1% | 75.6% |
| 4026008 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.72 | 38.0 | 4.83e-01 | 70.1% | 84.7% |
| 3479716 | 3459.1.1.0 ↗ | beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule | 0.71 | 26.0 | 3.33e-01 | 95.6% | 54.1% |
| 3963036 | 330.2.1.1 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › Ribosomal_S30AE | 0.67 | 42.0 | 4.89e-01 | 97.8% | 86.0% |
| 4617128 | 330.2.1.1 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › Ribosomal_S30AE | 0.67 | 44.0 | 4.80e-01 | 94.9% | 79.1% |
| 3281635 | 330.2.1.1 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › Ribosomal_S30AE | 0.65 | 44.0 | 4.88e-01 | 96.4% | 85.5% |
| 4321871 | 330.2.1.1 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › Ribosomal_S30AE | 0.65 | 44.0 | 4.93e-01 | 94.9% | 87.3% |
| 4968392 | 330.2.1.0 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) | 0.64 | 43.0 | 4.91e-01 | 96.4% | 92.0% |
| 4941364 | 330.2.1.0 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) | 0.64 | 39.0 | 4.45e-01 | 97.8% | 80.0% |
| 4937410 | 330.2.1.0 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) | 0.64 | 42.0 | 5.00e-01 | 95.6% | 96.8% |
| 4494004 | 330.2.1.1 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › Ribosomal_S30AE | 0.64 | 36.0 | 4.70e-01 | 89.1% | 98.7% |
| 5056130 | 330.2.1.0 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) | 0.64 | 43.0 | 5.12e-01 | 97.1% | 100.0% |
| 5024241 | 330.2.1.5 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181 | 0.64 | 43.0 | 5.06e-01 | 94.9% | 98.9% |
| 3801624 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.63 | 37.0 | 4.24e-01 | 70.1% | 78.0% |
| 5061259 | 330.2.1.1 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › Ribosomal_S30AE | 0.63 | 42.0 | 4.84e-01 | 96.4% | 93.0% |
| 5029238 | 330.2.1.0 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) | 0.63 | 43.0 | 4.94e-01 | 93.4% | 96.0% |
| 4927872 | 330.2.1.5 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181 | 0.63 | 41.0 | 4.40e-01 | 94.9% | 75.8% |
| 4132764 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.62 | 36.0 | 4.49e-01 | 99.3% | 91.8% |
| 5069695 | 330.2.1.5 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181 | 0.62 | 42.0 | 4.66e-01 | 95.6% | 86.2% |
| 4872853 | 330.2.1.1 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › Ribosomal_S30AE | 0.62 | 40.0 | 4.56e-01 | 95.6% | 88.2% |
| 5037621 | 330.2.1.0 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) | 0.61 | 40.0 | 4.75e-01 | 95.6% | 95.8% |
| 5008315 | 330.2.1.5 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181 | 0.61 | 42.0 | 4.85e-01 | 95.6% | 96.0% |
| 5075859 | 330.2.1.5 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › PF29181 | 0.61 | 42.0 | 4.67e-01 | 94.9% | 87.3% |
| 4932637 | 330.2.1.0 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) | 0.61 | 39.0 | 4.75e-01 | 94.9% | 100.0% |
| 5080980 | 330.2.1.1 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › Ribosomal_S30AE | 0.60 | 39.0 | 4.36e-01 | 97.1% | 82.7% |
| 4982298 | 330.2.1.1 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › Ribosomal_S30AE | 0.58 | 39.0 | 4.32e-01 | 95.6% | 86.2% |
| 4216680 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.57 | 33.0 | 3.93e-01 | 73.7% | 83.9% |
| 5025341 | 330.2.1.0 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) | 0.57 | 39.0 | 4.49e-01 | 92.7% | 96.0% |
| 3596526 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.57 | 38.0 | 4.29e-01 | 70.1% | 85.5% |
| 429988 | 330.2.1.1 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › Ribosomal_S30AE | 0.57 | 36.0 | 4.20e-01 | 95.6% | 92.5% |
| 5058021 | 330.2.1.0 ↗ | a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) | 0.56 | 40.0 | 4.51e-01 | 92.0% | 95.2% |
| 2391532 | 4194.1.1.1 ↗ | a+b duplicates or obligate multimers › Prenyltransferase-like › Prenyltransferase-like › Prenyltransferase-like › PTase_Orf2 | 0.53 | 45.0 | 3.48e-01 | 93.4% | 60.6% |
| 3534702 | 3711.1.1.0 ↗ | alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein | 0.51 | 37.0 | 4.12e-01 | 90.5% | 95.5% |
| 3857251 | 1134.1.2.0 ↗ | alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Archaeal C-Ala helical domain | 0.51 | 37.0 | 4.10e-01 | 90.5% | 95.5% |