←Back to structures
NC_047880.1__YP_009794386.1__HOS33_gp212__00212
Bact-VirNC_047880.1__YP_009794386.1__HOS33_gp212__00212
Identity
- Accession:
- NC_047880 ↗
- Kingdom:
- phage
Quality
67.2
mean pLDDT
Taxonomy
TaxID: 1983553
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 22-106
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3pggA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 48.0 | 4.97e-01 | 70.6% | 80.8% |
| 4c92G00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.69 | 49.0 | 5.24e-01 | 83.5% | 85.3% |
| 4c92F00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 47.0 | 4.96e-01 | 87.1% | 83.1% |
| 4c92C00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 45.0 | 4.65e-01 | 87.1% | 82.3% |
| 1d3bB00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 47.0 | 4.81e-01 | 92.9% | 88.9% |
| 6lbrA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.55 | 44.0 | 3.44e-01 | 89.4% | 82.7% |
| 4ckbD03 | 2.40.50.830 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.53 | 38.0 | 3.36e-01 | 77.6% | 80.6% |
| 2z04B03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.52 | 41.0 | 3.35e-01 | 90.6% | 95.2% |
| 4gnxB00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 37.0 | 3.31e-01 | 76.5% | 63.1% |
| 2cwaA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 41.0 | 3.91e-01 | 94.1% | 94.5% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3812580 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.73 | 56.0 | 4.95e-01 | 100.0% | 56.1% |
| 3626400 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.73 | 57.0 | 4.91e-01 | 100.0% | 53.8% |
| 3704663 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.73 | 51.0 | 5.39e-01 | 71.8% | 84.0% |
| 3505097 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.73 | 51.0 | 5.13e-01 | 87.1% | 71.8% |
| 3483309 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 57.0 | 4.93e-01 | 100.0% | 56.0% |
| 3592467 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 49.0 | 5.18e-01 | 70.6% | 82.7% |
| 4990442 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.71 | 50.0 | 5.18e-01 | 72.9% | 77.5% |
| 4024727 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.69 | 47.0 | 4.41e-01 | 70.6% | 57.7% |
| 3277139 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.69 | 47.0 | 4.23e-01 | 70.6% | 53.9% |
| 409204 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.68 | 48.0 | 4.50e-01 | 89.4% | 60.2% |
| 3398219 | 4.1.1.89 ↗ | beta barrels › SH3 › SH3 › SH3 › SM-ATX | 0.68 | 47.0 | 4.51e-01 | 70.6% | 65.3% |
| 3621457 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.68 | 46.0 | 5.03e-01 | 70.6% | 85.7% |
| 2167708 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 45.0 | 4.98e-01 | 92.9% | 87.7% |
| 3518029 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.68 | 46.0 | 4.41e-01 | 70.6% | 60.0% |
| 3927391 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.68 | 54.0 | 5.03e-01 | 84.7% | 69.9% |
| 3307064 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.67 | 44.0 | 4.43e-01 | 87.1% | 67.1% |
| 3701868 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.66 | 48.0 | 4.77e-01 | 88.2% | 72.2% |
| 3486357 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.66 | 51.0 | 5.30e-01 | 85.9% | 87.5% |
| 4976962 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 55.0 | 5.18e-01 | 96.5% | 82.0% |
| 3618787 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.61 | 40.0 | 3.71e-01 | 90.6% | 51.8% |
| 4024090 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.60 | 46.0 | 4.57e-01 | 83.5% | 77.8% |
| 3992248 | 391.1.2.9 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related › Fn1_2 | 0.58 | 27.0 | 3.38e-01 | 100.0% | 71.4% |
| 3796321 | 3523.1.1.0 ↗ | beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) | 0.54 | 38.0 | 3.20e-01 | 74.1% | 62.0% |
| None | — | 0.54 | 47.0 | 3.29e-01 | 100.0% | 96.3% | |
| 5027722 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.54 | 25.0 | 3.19e-01 | 98.8% | 77.8% |
| 3603591 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.53 | 44.0 | 3.02e-01 | 96.5% | 100.0% |
| 3583675 | 5.1.4.321 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30361 | 0.53 | 46.0 | 3.12e-01 | 100.0% | 90.3% |
| 3216405 | 3523.1.1.0 ↗ | beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) | 0.52 | 36.0 | 3.14e-01 | 74.1% | 58.6% |
| 4413512 | 206.1.3.25 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_4 | 0.51 | 40.0 | 3.06e-01 | 89.4% | 77.3% |