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NC_047880.1__YP_009794455.1__HOS33_gp281__00281

Bact-Vir

NC_047880.1__YP_009794455.1__HOS33_gp281__00281

Identity

Accession:
NC_047880 ↗
Kingdom:
phage

Quality

80.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-48
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6s2wA01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.79 68.0 5.57e-01 97.7% 69.5%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.78 67.0 4.56e-01 100.0% 31.7%
2jveA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.77 62.0 5.39e-01 100.0% 57.7%
3mahA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.77 65.0 5.66e-01 97.7% 100.0%
2qmwA03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.75 61.0 5.22e-01 97.7% 100.0%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.75 63.0 5.05e-01 100.0% 57.6%
7ejoB01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.73 61.0 5.07e-01 97.7% 73.5%
3eipA00 3.10.50.20 Alpha Beta › Roll › Chitinase A; domain 3 › Cloacin immunity protein 0.73 64.0 5.17e-01 100.0% 90.5%
1nh8A03 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.72 61.0 5.41e-01 100.0% 100.0%
2jvfA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.71 59.0 4.76e-01 100.0% 56.4%
3znuA00 3.30.70.1060 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel 0.70 58.0 4.69e-01 100.0% 88.3%
1iarB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.68 56.0 4.51e-01 100.0% 45.7%
6cc0A01 3.30.450.80 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Transcription factor LuxR-like, autoinducer-binding domain 0.67 45.0 3.10e-01 70.5% 97.0%
6julA02 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.66 56.0 4.42e-01 100.0% 57.3%
1vjvA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.65 57.0 3.43e-01 100.0% 20.1%
2j3wC00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.65 46.0 3.32e-01 81.8% 25.2%
3orqA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.64 50.0 4.62e-01 100.0% 66.7%
1kt0A02 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.63 51.0 3.95e-01 100.0% 70.2%
4p04A01 2.60.40.3100 Mainly Beta › Sandwich › Immunoglobulin-like › Arylsulphate sulphotransferase monomer, N-terminal domain 0.63 52.0 4.07e-01 100.0% 46.2%
1h3dA03 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 52.0 4.65e-01 100.0% 92.5%
6se8A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 51.0 3.96e-01 100.0% 49.1%
6spbZ00 3.30.1390.20 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L30/L7 0.61 47.0 4.47e-01 95.5% 98.2%
2z5bA00 3.30.230.100 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.61 44.0 3.16e-01 77.3% 29.9%
3nyiB01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.61 52.0 3.52e-01 97.7% 54.1%
2pw9C03 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.60 47.0 3.52e-01 97.7% 34.1%
1jx4A04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.60 49.0 3.96e-01 100.0% 57.1%
4l8jA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.60 51.0 4.08e-01 100.0% 67.4%
3mfiA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.60 47.0 3.67e-01 100.0% 61.3%
1g0dA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 49.0 3.58e-01 100.0% 44.5%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.59 48.0 3.77e-01 100.0% 58.7%
7bjkA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.59 44.0 3.37e-01 84.1% 82.3%
2r6fA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.58 46.0 4.14e-01 100.0% 66.7%
2vsdA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 44.0 3.61e-01 93.2% 79.6%
2qsdB02 3.50.100.10 Alpha Beta › 3-Layer(bba) Sandwich › protein il1583 fold › protein il1583 domain 0.56 47.0 4.02e-01 100.0% 62.8%
2wq4A01 2.60.120.760 Mainly Beta › Sandwich › Jelly Rolls › 0.55 44.0 3.34e-01 100.0% 73.6%
4wiwA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.55 45.0 4.00e-01 97.7% 100.0%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.55 42.0 3.40e-01 100.0% 45.0%
4p6bB00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.55 44.0 2.66e-01 100.0% 81.5%
3wnoA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 45.0 3.60e-01 100.0% 51.0%
6kryA01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.54 43.0 3.23e-01 100.0% 74.6%
1rh8A00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.54 44.0 3.20e-01 100.0% 46.5%
2je8A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 42.0 3.20e-01 88.6% 83.6%
3nmeA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 43.0 3.49e-01 100.0% 48.4%
1yq2A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 38.0 3.10e-01 100.0% 49.6%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4973571 304.4.1.82 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › DUF3303 0.81 71.0 5.71e-01 100.0% 85.9%
4951657 304.4.1.82 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › DUF3303 0.77 67.0 5.44e-01 100.0% 85.9%
5078886 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.77 63.0 4.74e-01 100.0% 37.3%
5033599 304.4.1.82 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › DUF3303 0.75 62.0 5.26e-01 100.0% 93.8%
4175430 1119.1.1.1 a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW 0.74 62.0 3.94e-01 100.0% 23.5%
3510118 4076.1.1.0 a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like 0.74 61.0 5.68e-01 100.0% 74.5%
5076160 284.1.2.0 a+b two layers › FKBP-like › FKBP-like › Conserved carboxy-terminal domain of oxidative-stress-responsive kinase 1-like kinases 0.72 63.0 4.67e-01 100.0% 57.9%
4963 4012.1.1.1 a+b two layers › SSHS domain › SSHS domain in type II DNA topoisomerase › SSHS domain in type II DNA topoisomerase › TOPRIM_C 0.72 56.0 5.70e-01 100.0% 95.3%
5066414 304.5.1.0 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.72 62.0 5.13e-01 100.0% 87.5%
4033537 1119.1.1.1 a+b complex topology › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › 6-carboxyhexanoate-CoA ligase › BioW 0.71 59.0 3.79e-01 100.0% 24.3%
5060983 862.1.1.1 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.70 60.0 3.66e-01 100.0% 15.8%
4038263 887.1.1.1 a+b two layers › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal_L30 0.69 55.0 5.14e-01 95.5% 100.0%
4046774 887.1.1.1 a+b two layers › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal_L30 0.69 57.0 5.24e-01 97.7% 100.0%
4927986 206.1.3.17 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DUF1297 0.68 54.0 3.29e-01 97.7% 14.6%
5036139 10.7.1.0 beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 0.68 58.0 4.60e-01 97.7% 46.7%
4946939 862.1.1.1 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.68 55.0 3.63e-01 100.0% 21.0%
3649276 887.1.1.0 a+b two layers › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e 0.68 56.0 4.23e-01 100.0% 85.0%
3964360 4187.1.1.2 a+b two layers › NosL/MerB-like › NosL/MerB-like › NosL/MerB-like › NosL 0.67 54.0 4.52e-01 100.0% 51.2%
4611799 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.67 57.0 4.40e-01 100.0% 44.8%
3627192 11.1.4.71 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › NOMO1-like_7th 0.67 57.0 4.98e-01 100.0% 62.9%
4138417 284.1.1.4 a+b two layers › FKBP-like › FKBP-like › FKBP-like › GreA_GreB 0.66 56.0 4.72e-01 100.0% 87.5%
3688295 221.1.1.73 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RASSF8-10_RA 0.66 50.0 4.19e-01 100.0% 45.9%
3848358 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 54.0 3.95e-01 100.0% 34.8%
4661047 2003.1.5.42 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_21 0.64 53.0 3.24e-01 88.6% 34.7%
1568132 10.32.1.52 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GH115_C 0.64 55.0 3.94e-01 100.0% 64.2%
4950851 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 49.0 4.89e-01 90.9% 100.0%
4042443 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.63 53.0 4.24e-01 100.0% 47.4%
4013619 887.1.1.0 a+b two layers › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e 0.62 49.0 4.29e-01 100.0% 76.2%
3575366 221.1.1.76 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.62 49.0 4.00e-01 95.5% 66.3%
3216210 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.62 50.0 4.91e-01 100.0% 96.0%
4599941 887.1.1.0 a+b two layers › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e 0.62 49.0 4.62e-01 100.0% 96.7%
5003527 2492.1.1.7 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › FdhD-NarQ 0.61 49.0 3.52e-01 97.7% 32.0%
3256588 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 50.0 3.49e-01 100.0% 28.0%
4316907 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 51.0 3.65e-01 100.0% 40.7%
3969006 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.59 46.0 4.65e-01 100.0% 100.0%
3499101 3346.1.1.5 a+b two layers › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › ODR4-like 0.59 47.0 3.30e-01 100.0% 28.1%
3975705 3115.6.1.0 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon 0.59 46.0 4.54e-01 100.0% 86.0%
4188115 109.4.1.1310 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_TRIP12_N 0.59 42.0 2.31e-01 100.0% 4.4%
5008102 148.1.1.0 alpha arrays › Histone-like › Histone-related › Histone 0.59 47.0 3.81e-01 100.0% 98.0%
4929079 821.1.1.15 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF7508 0.59 46.0 3.87e-01 100.0% 47.9%
4547274 3714.1.1.0 a+b two layers › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain 0.58 45.0 3.71e-01 97.7% 98.0%
4007508 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.58 44.0 4.40e-01 100.0% 86.0%
4944411 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 41.0 3.04e-01 79.5% 31.9%
4004704 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.58 45.0 4.49e-01 100.0% 97.8%
3968122 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.58 44.0 4.47e-01 100.0% 97.8%
4565829 223.1.1.7 a+b three layers › Profilin-like › sensor domains › sensor domains › Autoind_bind 0.56 41.0 2.82e-01 84.1% 23.3%
223777 3115.4.1.1 a+b two layers › GP2-like › Uncharacterized conserved protein Il1583 › Uncharacterized conserved protein Il1583 › DUF1543 0.56 47.0 4.02e-01 100.0% 65.3%
3781751 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 45.0 3.38e-01 100.0% 43.1%
5080205 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.55 42.0 4.20e-01 100.0% 96.0%
3597533 4357.1.1.0 beta barrels › WWE domain › WWE domain › WWE domain 0.55 45.0 3.59e-01 100.0% 79.0%
4623391 223.1.1.7 a+b three layers › Profilin-like › sensor domains › sensor domains › Autoind_bind 0.53 46.0 3.12e-01 100.0% 57.6%
3720315 11.9.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › FAH › FAH › FAA_hydrolase 0.53 43.0 2.73e-01 100.0% 66.7%
3407408 11.10.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.53 41.0 3.21e-01 100.0% 49.6%
4463006 3115.2.1.0 a+b two layers › GP2-like › GP2 › GP2 0.53 39.0 3.94e-01 97.7% 97.8%
D2 high residues 71-118
PDB