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NC_047882.1__YP_009794712.1__HOS35_gp029__00029

Bact-Vir

NC_047882.1__YP_009794712.1__HOS35_gp029__00029

Identity

Accession:
NC_047882 ↗
Kingdom:
phage

Quality

92.9 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-84
PDB
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5c9eB01 1.20.1280.80 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.70 47.0 4.67e-01 81.0% 66.7%
5jc3A02 1.20.1320.30 Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › 0.67 59.0 5.21e-01 100.0% 89.7%
1wjzA00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.67 45.0 4.37e-01 94.0% 61.7%
3k2jA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.66 59.0 5.25e-01 100.0% 79.3%
5n17A01 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.66 59.0 5.50e-01 100.0% 88.5%
3lqhA02 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.64 56.0 5.23e-01 100.0% 78.3%
5jajA03 1.20.1320.30 Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › 0.64 49.0 4.35e-01 100.0% 57.8%
1nafA02 1.20.58.160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.64 47.0 4.75e-01 77.4% 80.0%
5n13A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.64 56.0 5.22e-01 100.0% 95.4%
3cegA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.64 48.0 3.33e-01 81.0% 62.3%
3behB01 1.20.120.540 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels 0.63 47.0 4.24e-01 79.8% 66.7%
2rldA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.63 55.0 4.96e-01 95.2% 95.6%
2qwoB00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.62 47.0 4.64e-01 81.0% 84.8%
3a11B01 1.20.120.420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 0.62 44.0 3.89e-01 89.3% 49.6%
5ko4A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.62 55.0 5.22e-01 100.0% 87.1%
2mtqA00 1.20.58.130 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 42.0 4.44e-01 77.4% 80.8%
4hfvA01 1.20.1440.330 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.61 53.0 4.80e-01 100.0% 85.5%
1jalA03 1.10.150.300 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Obg-related GTPase Ych/YyaF, coiled-coil domain 0.60 40.0 4.06e-01 100.0% 70.4%
4n4gA01 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.60 53.0 4.82e-01 100.0% 74.8%
2gscC00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.59 50.0 4.67e-01 96.4% 91.8%
2yfaA02 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.59 53.0 4.75e-01 100.0% 93.1%
1siqA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.59 52.0 4.29e-01 100.0% 79.4%
1or7B01 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.58 41.0 4.03e-01 75.0% 90.4%
1aluA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.58 50.0 4.10e-01 96.4% 59.2%
1wp9B03 1.20.1320.20 Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › hef helicase domain 0.55 48.0 4.18e-01 100.0% 81.5%
1or4B00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 44.0 3.69e-01 91.7% 90.5%
1k32A03 3.30.750.44 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › 0.53 38.0 3.99e-01 100.0% 87.5%
2ddhA01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.53 38.0 3.40e-01 81.0% 53.4%
2w31A00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.53 44.0 3.72e-01 95.2% 94.7%
1yo7A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.52 47.0 4.17e-01 100.0% 75.0%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3540634 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.75 51.0 4.38e-01 95.2% 45.4%
3250076 633.1.1.1 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.74 67.0 5.59e-01 100.0% 69.3%
3487084 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.71 50.0 4.26e-01 82.1% 45.9%
5061845 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.66 49.0 4.65e-01 78.6% 74.0%
3743879 604.6.1.0 alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.66 48.0 4.63e-01 77.4% 71.6%
5012249 4995.1.1.0 alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like 0.64 44.0 4.25e-01 82.1% 63.2%
3701078 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.63 55.0 4.70e-01 95.2% 79.3%
3183168 109.4.1.356 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.63 56.0 3.43e-01 95.2% 19.8%
3923001 109.4.1.70 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CID 0.63 45.0 3.71e-01 75.0% 70.3%
4949593 3718.1.1.0 alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT 0.63 44.0 4.24e-01 73.8% 64.2%
3225319 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.63 57.0 5.10e-01 100.0% 91.3%
3458224 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.62 46.0 4.22e-01 78.6% 62.7%
4036522 604.9.1.1 alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 › Ribosomal_S20p 0.62 42.0 4.11e-01 76.2% 64.4%
5078219 3684.1.1.0 alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like 0.62 44.0 3.47e-01 75.0% 58.3%
3827313 633.4.1.0 alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor 0.62 56.0 5.10e-01 100.0% 94.5%
5018283 633.10.1.0 alpha bundles › Bromodomain-like › IVS-encoded protein-like › IVS-encoded protein-like 0.61 54.0 5.07e-01 95.2% 81.0%
3483038 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.60 52.0 4.60e-01 95.2% 83.2%
3543090 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.60 44.0 4.08e-01 77.4% 80.0%
3815122 604.12.1.68 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › DUF6857 0.60 43.0 3.33e-01 76.2% 36.1%
3905497 633.7.1.5 alpha bundles › Bromodomain-like › Bacillus cereus metalloprotein-like › Bacillus cereus metalloprotein-like › Piezo_TM1-24 0.60 52.0 4.34e-01 96.4% 89.7%
3545313 150.1.1.79 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Piezo_TM1-24 0.59 51.0 4.35e-01 94.0% 95.6%
5039441 633.21.1.47 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › SPW 0.59 53.0 4.84e-01 98.8% 90.9%
3491651 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.59 49.0 3.91e-01 96.4% 58.9%
3919997 3615.1.1.0 alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain 0.58 50.0 4.47e-01 96.4% 88.3%
5039407 633.6.1.1 alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA_dh_1 0.57 51.0 4.05e-01 100.0% 80.5%
3796800 633.21.1.0 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.56 49.0 4.30e-01 100.0% 88.5%
3920463 6165.1.1.0 beta sandwiches › Piezo CTL2 domain › Piezo CTL2 domain › Piezo CTL2 domain 0.56 50.0 3.11e-01 100.0% 32.8%
3466334 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.56 48.0 4.24e-01 98.8% 84.6%
3276902 109.4.1.1224 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_DOCK9 0.55 47.0 3.29e-01 94.0% 46.3%
4934175 150.1.1.3 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Rubrerythrin 0.55 48.0 4.07e-01 97.6% 82.1%
3392844 109.4.1.933 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_Trm732 0.55 47.0 2.96e-01 92.9% 23.9%
3406182 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.53 37.0 3.40e-01 79.8% 55.5%
3936257 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 38.0 2.71e-01 77.4% 32.4%
D2 medium residues 91-133
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6s10A01 1.10.1710.10 Mainly Alpha › Orthogonal Bundle › Fertility Inhibition Protein O; Chain: A; Domain 1 › ProQ/FinO domain 0.71 58.0 4.60e-01 100.0% 56.9%
4yiiA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 58.0 5.07e-01 100.0% 72.2%
1k78I00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 59.0 5.42e-01 100.0% 82.8%
6s2wA01 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.70 58.0 4.82e-01 100.0% 68.3%
2lbfB01 1.10.10.1410 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.69 58.0 5.02e-01 97.7% 66.7%
1z82B02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.63 49.0 3.60e-01 95.3% 43.5%
5zorA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.62 51.0 4.38e-01 97.7% 84.9%
7s03A01 1.10.10.1450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.61 48.0 4.67e-01 100.0% 84.0%
5hvqC02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 47.0 3.86e-01 100.0% 54.1%
2yjgA01 3.90.226.30 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › LarA, C-terminal domain 0.60 50.0 3.37e-01 100.0% 62.7%
1ignA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.59 48.0 3.92e-01 100.0% 75.3%
1np7A02 1.25.40.80 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.58 48.0 3.60e-01 100.0% 97.5%
5xpyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 39.0 3.10e-01 76.7% 63.0%
3mggA02 6.10.140.1580 Special › Helix non-globular › Helix Hairpins › 0.57 45.0 3.78e-01 100.0% 75.3%
1vb3A01 3.90.1380.10 Alpha Beta › Alpha-Beta Complex › threonine synthase, domain 1, chain A › Threonine synthase, N-terminal domain 0.54 43.0 3.63e-01 95.3% 79.0%
7qaqA01 3.40.50.11710 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cyclodipeptide synthase 0.54 44.0 2.89e-01 97.7% 39.4%
5hvqC01 3.90.1150.220 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.53 41.0 3.60e-01 100.0% 68.8%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5028090 610.3.1.0 alpha arrays › ERP29 C domain-like › GatB/GatE C-terminal domain › GatB/GatE C-terminal domain 0.80 69.0 4.78e-01 100.0% 32.4%
4073499 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.74 58.0 5.89e-01 100.0% 100.0%
4472631 101.35.1.1 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH2 0.70 60.0 5.94e-01 97.7% 93.3%
3311830 708.1.1.7 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › DBD_Tnp_Mut 0.70 59.0 4.22e-01 100.0% 33.3%
4033611 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.69 57.0 5.69e-01 97.7% 100.0%
3814136 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 57.0 5.37e-01 100.0% 81.8%
3422646 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.68 57.0 5.22e-01 100.0% 76.7%
4949223 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 56.0 5.23e-01 100.0% 87.9%
5070167 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.66 53.0 4.99e-01 100.0% 72.7%
5046694 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 52.0 4.94e-01 93.0% 74.5%
4678981 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.66 53.0 5.21e-01 100.0% 86.0%
3266823 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.66 55.0 5.17e-01 100.0% 80.0%
5083383 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.66 55.0 5.02e-01 100.0% 73.3%
3443787 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 51.0 4.33e-01 100.0% 58.8%
3933926 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.64 54.0 4.78e-01 100.0% 69.2%
3798418 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.62 42.0 3.67e-01 76.7% 52.5%
4994794 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 51.0 4.39e-01 100.0% 70.7%
5026209 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.62 49.0 4.59e-01 100.0% 75.0%
3935045 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.61 53.0 4.58e-01 100.0% 64.3%
3282905 4085.2.1.1 alpha arrays › RbcX-like › uncharacterized protein LPG2149 › uncharacterized protein LPG2149 › Helicase_C_3 0.61 50.0 4.17e-01 100.0% 94.1%
3909922 101.1.1.12 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc3_2 0.60 48.0 4.72e-01 100.0% 88.0%
3904610 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.60 47.0 4.75e-01 100.0% 100.0%
4929815 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.60 48.0 4.39e-01 100.0% 66.2%
3955434 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.59 45.0 4.42e-01 100.0% 80.0%
5046292 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 50.0 4.21e-01 100.0% 83.7%
3243611 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.59 50.0 4.80e-01 100.0% 88.0%
3879117 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.59 49.0 4.62e-01 100.0% 81.8%
5007660 101.1.1.187 alpha arrays › HTH › HTH › Three-helical HTH › HTH_33 0.59 48.0 4.33e-01 100.0% 76.9%
3326259 1091.1.1.0 alpha arrays › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 › 60S acidic ribosomal protein P1/P2 0.59 43.0 4.21e-01 88.4% 86.0%
3621586 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 48.0 4.52e-01 95.3% 78.2%
4993912 102.1.1.11 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_Rpb4 0.58 45.0 4.10e-01 100.0% 71.4%
3198858 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.58 46.0 4.14e-01 100.0% 71.4%
3702555 3945.1.1.1 alpha superhelices › N-terminal fragment of dynein heavy chain › N-terminal fragment of dynein heavy chain › N-terminal fragment of dynein heavy chain › DHC_N1 0.58 48.0 3.09e-01 97.7% 39.1%
3884711 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.58 49.0 4.41e-01 100.0% 69.2%
3908865 101.1.2.536 alpha arrays › HTH › HTH › winged helix domain › HTH_Tnp_Tc3_2 0.58 46.0 4.38e-01 100.0% 80.0%
3893171 101.1.1.12 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc3_2 0.58 46.0 4.32e-01 100.0% 75.0%
3334149 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.57 49.0 4.59e-01 100.0% 80.0%
3796539 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.56 45.0 4.53e-01 95.3% 100.0%
3618386 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.55 44.0 4.45e-01 97.7% 97.8%
4999606 2006.1.4.50 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › DUF3368 0.52 37.0 3.02e-01 97.7% 36.8%