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NC_047882.1__YP_009794764.1__HOS35_gp081__00081

Bact-Vir

NC_047882.1__YP_009794764.1__HOS35_gp081__00081

Identity

Accession:
NC_047882 ↗
Kingdom:
phage

Quality

62.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Demerecviridae› Jesfedecavirus› Vibrio_phage_JSF12

TaxID: 1983595

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-69
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2eqmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 65.0 6.55e-01 100.0% 90.6%
3p8bB02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.77 62.0 5.90e-01 100.0% 74.2%
1mhnA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.77 61.0 5.88e-01 100.0% 76.3%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 59.0 6.10e-01 100.0% 91.8%
3pmiA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 60.0 5.60e-01 100.0% 70.8%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 58.0 5.60e-01 100.0% 76.3%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 59.0 6.19e-01 100.0% 97.9%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 56.0 5.19e-01 100.0% 64.7%
2ckkA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.70 58.0 5.68e-01 100.0% 84.2%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 61.0 5.38e-01 100.0% 67.1%
2qf4A02 2.40.10.350 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 2 0.68 57.0 4.77e-01 94.2% 89.0%
6eotD01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.67 60.0 3.40e-01 100.0% 12.4%
6e55A01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.66 58.0 5.20e-01 100.0% 82.4%
3k8uA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.66 51.0 3.87e-01 100.0% 35.1%
3vgzC00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.65 57.0 3.48e-01 100.0% 23.5%
5zr6A02 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.65 56.0 5.00e-01 100.0% 82.9%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 55.0 5.23e-01 100.0% 87.5%
2k4yA00 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.63 55.0 4.70e-01 100.0% 68.6%
2k5iA01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.63 55.0 4.74e-01 100.0% 70.2%
2mdrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.62 48.0 4.06e-01 88.5% 61.7%
2x0qA01 3.30.310.280 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.61 49.0 3.71e-01 90.4% 39.1%
5ighA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.61 53.0 4.52e-01 100.0% 89.8%
6ipaA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 46.0 3.37e-01 86.5% 96.4%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 52.0 5.01e-01 100.0% 88.3%
1ri6A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 51.0 3.19e-01 100.0% 21.3%
3u2gA02 2.60.98.40 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › DU1608 C-terminal domain 0.60 50.0 3.76e-01 92.3% 58.9%
2xepB01 3.10.450.280 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 49.0 4.00e-01 100.0% 78.9%
2wfwB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.60 51.0 4.69e-01 94.2% 85.1%
4hcsA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 44.0 4.12e-01 92.3% 62.7%
3c96A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 47.0 3.43e-01 92.3% 85.7%
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 43.0 4.00e-01 90.4% 61.2%
2mp1A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 42.0 3.80e-01 90.4% 54.5%
2xr1A03 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.57 39.0 2.61e-01 76.9% 55.8%
1noyA01 3.30.342.10 Alpha Beta › 2-Layer Sandwich › DNA Polymerase; Chain A, domain 1 › DNA Polymerase, chain B, domain 1 0.56 41.0 3.12e-01 80.8% 69.4%
2k3dA00 3.10.450.130 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › folded 79 residue fragment of lin0334 like domains 0.56 46.0 4.05e-01 100.0% 60.9%
2arhA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 47.0 3.43e-01 100.0% 55.7%
3imhA00 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.56 45.0 2.87e-01 100.0% 37.0%
2czoA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.55 41.0 3.24e-01 84.6% 92.3%
4l8hB00 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.54 45.0 3.55e-01 100.0% 50.4%
5c98B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.53 45.0 3.47e-01 100.0% 68.2%
1j4sA00 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.52 40.0 3.09e-01 94.2% 94.0%
2jz4A01 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.52 40.0 3.09e-01 96.2% 80.4%
4oevA02 3.90.76.10 Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 0.52 43.0 3.41e-01 98.1% 84.3%
4jlxA02 3.30.460.90 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.51 38.0 2.87e-01 90.4% 81.0%
2ml5A00 3.10.450.410 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 41.0 3.10e-01 100.0% 68.4%
2oap202 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 35.0 2.27e-01 73.1% 19.1%
ECOD (71)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3834390 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 66.0 6.76e-01 100.0% 90.0%
4524466 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.79 63.0 5.70e-01 100.0% 64.3%
3405627 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 61.0 5.03e-01 100.0% 47.4%
3344796 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.78 66.0 5.65e-01 100.0% 59.0%
3928430 4.1.1.223 ↗ beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.77 67.0 6.08e-01 98.1% 71.4%
3575865 4.1.1.169 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4819 0.77 63.0 5.71e-01 100.0% 67.1%
3251940 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.76 62.0 5.52e-01 100.0% 62.7%
3885049 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.76 60.0 5.94e-01 100.0% 81.8%
3482225 4.1.1.300 ↗ beta barrels › SH3 › SH3 › SH3 › KN17_SH3, SH3_KIN17_C 0.76 63.0 4.62e-01 100.0% 36.2%
3922903 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.76 61.0 5.90e-01 100.0% 78.3%
3301015 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 66.0 6.16e-01 98.1% 80.0%
3296833 4.1.1.300 ↗ beta barrels › SH3 › SH3 › SH3 › KN17_SH3, SH3_KIN17_C 0.75 63.0 4.56e-01 100.0% 34.8%
3926118 4.1.1.223 ↗ beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.75 64.0 6.17e-01 98.1% 83.3%
3448975 4.1.1.66 ↗ beta barrels › SH3 › SH3 › SH3 › LBR_tudor 0.74 66.0 6.15e-01 100.0% 81.5%
3780847 4.1.1.187 ↗ beta barrels › SH3 › SH3 › SH3 › DIRP 0.74 61.0 4.32e-01 100.0% 31.3%
3781440 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.74 65.0 5.66e-01 100.0% 66.3%
3932484 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 64.0 6.06e-01 100.0% 82.8%
4027263 4.1.1.104 ↗ beta barrels › SH3 › SH3 › SH3 › KN17_SH3 0.73 62.0 4.68e-01 100.0% 40.8%
3357239 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.73 63.0 4.46e-01 98.1% 43.0%
3332609 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.72 63.0 4.74e-01 98.1% 54.4%
3278301 9.2.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin 0.72 63.0 5.03e-01 100.0% 74.3%
3487837 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 64.0 4.27e-01 100.0% 29.0%
3577380 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.71 54.0 5.03e-01 100.0% 64.3%
3751502 4.1.1.365 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_KIN17_C 0.71 59.0 5.38e-01 100.0% 68.6%
3816455 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.71 61.0 4.65e-01 98.1% 54.4%
3363448 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.71 62.0 5.26e-01 98.1% 64.7%
3492018 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 61.0 4.88e-01 98.1% 54.3%
3576940 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 62.0 4.01e-01 100.0% 26.7%
3625263 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 61.0 4.96e-01 100.0% 60.0%
3482359 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 60.0 4.71e-01 98.1% 71.8%
3376597 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 53.0 5.62e-01 84.6% 100.0%
3306580 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 56.0 5.33e-01 88.5% 91.7%
3513281 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.68 53.0 4.66e-01 100.0% 55.3%
4147969 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.68 50.0 4.24e-01 78.8% 50.6%
3286540 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.67 58.0 4.83e-01 100.0% 93.7%
4001239 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 54.0 4.54e-01 92.3% 76.8%
3207081 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.67 58.0 5.43e-01 100.0% 90.8%
3979986 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.67 59.0 5.24e-01 100.0% 81.3%
3660244 4.1.1.141 ↗ beta barrels › SH3 › SH3 › SH3 › PTM_DIR17_Tudor 0.66 54.0 4.79e-01 98.1% 62.7%
3991018 708.1.1.16 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.66 55.0 4.92e-01 100.0% 78.8%
3787112 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 58.0 5.03e-01 100.0% 72.5%
3317821 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 55.0 4.91e-01 94.2% 84.0%
3991019 708.1.1.16 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › RYYR-CCHC 0.65 55.0 5.18e-01 100.0% 78.5%
3888709 2.1.1.67 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ten1_2 0.65 50.0 3.77e-01 86.5% 72.6%
3282412 4312.1.1.4 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 0.64 51.0 3.98e-01 92.3% 65.9%
3989855 706.2.1.8 ↗ beta complex topology › Head domain of nucleotide exchange factor GrpE › G5 and E repeats in surface protein G › G5 and E repeats in surface protein G › CFSR 0.64 44.0 4.09e-01 75.0% 78.6%
3505384 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 55.0 3.37e-01 100.0% 19.4%
3895924 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.63 50.0 3.67e-01 90.4% 53.1%
4933001 3933.1.1.0 ↗ a+b two layers › Uncharacterized protein YPO2434 › Uncharacterized protein YPO2434 › Uncharacterized protein YPO2434 0.62 52.0 4.68e-01 96.2% 98.7%
3592506 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 53.0 3.26e-01 100.0% 25.7%
3626615 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 55.0 4.31e-01 100.0% 94.5%
3988584 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.62 49.0 4.06e-01 90.4% 49.0%
4545587 5.1.3.154 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PF30361 0.61 53.0 3.13e-01 100.0% 19.8%
4034236 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.61 46.0 3.57e-01 82.7% 35.8%
4946001 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.61 53.0 3.21e-01 100.0% 18.0%
4023011 2003.1.3.5 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › NAD_binding_8 0.61 51.0 3.36e-01 94.2% 43.9%
5019517 5090.1.1.6 ↗ beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains › S-layer 0.59 48.0 3.47e-01 88.5% 58.1%
3993710 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.59 48.0 4.35e-01 100.0% 86.3%
3633309 5.1.4.169 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.59 48.0 2.92e-01 100.0% 15.2%
3423192 387.1.1.0 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related 0.58 37.0 4.00e-01 71.2% 79.1%
3383999 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.58 48.0 3.14e-01 100.0% 33.2%
3195648 247.1.1.1 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.58 42.0 2.75e-01 80.8% 25.9%
4386896 2002.1.1.120 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.58 42.0 2.68e-01 80.8% 30.1%
3695678 3924.1.1.0 ↗ alpha complex topology › Sterol uptake control protein 2 › Sterol uptake control protein 2 › Sterol uptake control protein 2 0.57 44.0 2.70e-01 94.2% 21.6%
5044391 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.56 44.0 4.50e-01 92.3% 98.0%
3392142 389.1.2.1 ↗ few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › Sushi 0.55 43.0 4.26e-01 100.0% 83.6%
3998167 247.1.1.0 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase 0.54 46.0 3.02e-01 100.0% 24.8%
3987365 896.1.1.4 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › DDE_Tnp_IS66 0.54 41.0 3.70e-01 90.4% 75.0%
3462999 708.1.1.7 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › DBD_Tnp_Mut 0.52 42.0 3.88e-01 98.1% 70.0%
3284226 211.1.1.6 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase_3 0.52 41.0 3.09e-01 98.1% 78.1%
3990341 11.2.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.51 42.0 3.53e-01 98.1% 61.0%