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NC_047882.1__YP_009794778.1__HOS35_gp095__00095

Bact-Vir

NC_047882.1__YP_009794778.1__HOS35_gp095__00095

Identity

Accession:
NC_047882 ↗
Kingdom:
phage

Quality

75.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Demerecviridae› Jesfedecavirus› Vibrio_phage_JSF12

TaxID: 1983595

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-94
PDB
Domain cluster: representative
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5jp0A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 47.0 4.24e-01 81.6% 66.9%
2vzsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 44.0 4.14e-01 74.7% 62.7%
1jz7A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.62 44.0 4.10e-01 77.0% 68.7%
1jkfA03 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.60 39.0 4.57e-01 96.6% 96.7%
3ejvA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 44.0 3.67e-01 83.9% 95.0%
2lnjA00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.57 49.0 4.02e-01 98.9% 58.2%
2gjvA00 3.30.2000.10 Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like 0.56 46.0 4.09e-01 95.4% 94.9%
6toaF01 3.30.2000.30 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.56 45.0 4.09e-01 94.3% 100.0%
3f4lA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.55 38.0 2.89e-01 71.3% 79.8%
5ig0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 43.0 3.80e-01 85.1% 96.9%
3ro6C01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.55 44.0 4.17e-01 100.0% 71.7%
3v9oA00 3.30.1130.10 Alpha Beta › 2-Layer Sandwich › GTP Cyclohydrolase I, domain 2 › GTP cyclohydrolase I, C-terminal domain/NADPH-dependent 7-cyano-7-deazaguanine reductase, N-terminal domain 0.54 41.0 3.76e-01 83.9% 75.2%
4it1B01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.54 41.0 3.44e-01 100.0% 47.1%
3qfgA00 2.60.40.1240 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 45.0 3.85e-01 94.3% 71.0%
2cc3A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.53 41.0 3.58e-01 86.2% 91.0%
3ddmA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 39.0 3.52e-01 100.0% 55.2%
5xd7A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.53 41.0 3.63e-01 100.0% 57.5%
2wjqA00 2.40.160.40 Mainly Beta › Beta Barrel › Porin › monomeric porin ompg 0.53 47.0 3.59e-01 100.0% 76.1%
4j8tA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 41.0 3.64e-01 83.9% 95.3%
3nrfA00 2.60.40.4110 Mainly Beta › Sandwich › Immunoglobulin-like › Protein of unknown function DUF4354 0.52 42.0 4.06e-01 89.7% 83.3%
1ar0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 41.0 3.69e-01 86.2% 91.2%
2gdqA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.52 41.0 3.84e-01 100.0% 69.2%
3px5A01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 44.0 4.02e-01 100.0% 70.7%
3ebtA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 39.0 3.50e-01 83.9% 93.1%
2qddA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 43.0 3.78e-01 100.0% 62.3%
3lygA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 38.0 3.52e-01 83.9% 94.2%
3dkzA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.50 44.0 3.97e-01 100.0% 82.4%
2oztA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.50 34.0 3.14e-01 70.1% 97.5%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3742191 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.67 49.0 4.79e-01 78.2% 95.8%
4018218 11.1.1.14 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 0.66 46.0 4.55e-01 73.6% 68.9%
3938628 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.66 48.0 4.61e-01 77.0% 67.0%
5032790 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 50.0 4.78e-01 81.6% 72.0%
3434668 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 45.0 3.87e-01 81.6% 62.7%
4031151 4056.1.1.0 ↗ beta barrels › Barrel domain in upper collar protein › Barrel domain in upper collar protein › Barrel domain in upper collar protein 0.60 30.0 3.25e-01 88.5% 53.3%
3878539 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 49.0 4.21e-01 90.8% 57.3%
3819740 284.1.3.4 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › CCTL2_WNK 0.60 37.0 3.69e-01 98.9% 60.0%
3802306 284.1.2.0 ↗ a+b two layers › FKBP-like › FKBP-like › Conserved carboxy-terminal domain of oxidative-stress-responsive kinase 1-like kinases 0.59 37.0 3.62e-01 98.9% 56.8%
4088781 12.3.1.6 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Bgal_small_N 0.59 45.0 3.67e-01 83.9% 63.3%
5072612 222.1.1.9 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydrat_N 0.58 40.0 3.32e-01 71.3% 98.8%
2392665 5084.1.1.12 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Porin_7 0.57 42.0 3.83e-01 100.0% 57.8%
4171258 330.1.1.2 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5 0.57 36.0 3.84e-01 90.8% 73.3%
3798295 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.57 42.0 3.38e-01 80.5% 81.1%
3818565 881.1.1.1 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.56 47.0 4.03e-01 97.7% 67.1%
4021243 10.1.1.16 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Peptidase_A4 0.55 44.0 3.24e-01 96.6% 33.5%
3375447 274.1.1.46 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › CcmF_C 0.55 39.0 3.74e-01 83.9% 63.8%
4087100 330.1.1.2 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5 0.54 36.0 3.72e-01 93.1% 73.8%
4003943 883.1.1.0 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.53 41.0 3.53e-01 86.2% 84.0%
3360680 5.1.4.62 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN 0.52 39.0 2.69e-01 83.9% 32.1%
4347156 222.1.1.17 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N 0.52 44.0 3.93e-01 98.9% 77.0%
3330582 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.51 37.0 3.32e-01 95.4% 53.6%
3474450 243.1.1.2 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.51 39.0 3.57e-01 85.1% 89.6%
4025547 330.1.1.2 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5 0.51 36.0 3.82e-01 74.7% 92.0%
3615383 883.1.1.0 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.51 46.0 3.63e-01 100.0% 69.7%
3581277 883.1.1.0 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.51 46.0 3.53e-01 100.0% 62.1%
3742742 330.1.1.2 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5 0.50 37.0 3.43e-01 78.2% 69.6%
3217527 883.1.1.1 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.50 45.0 3.54e-01 100.0% 63.2%
168807 222.1.1.4 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT 0.50 44.0 3.97e-01 100.0% 82.4%
3788359 330.1.1.2 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Ribosomal_S5 0.50 37.0 3.62e-01 78.2% 87.4%
3559952 71.2.1.4 ↗ beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › CATIP_N 0.50 38.0 2.88e-01 83.9% 78.8%
3742423 5.1.4.31 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lgl_C 0.50 43.0 2.51e-01 100.0% 19.1%
3610229 883.1.1.0 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.50 43.0 2.79e-01 97.7% 24.7%