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NC_047887.1__YP_009795333.1__HOS40_gp043__00126

Bact-Vir

NC_047887.1__YP_009795333.1__HOS40_gp043__00126

Identity

Accession:
NC_047887 ↗
Kingdom:
phage

Quality

81.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Demerecviridae› Hongcheonvirus› Pectobacterium_phage_DU_PP_V

TaxID: 2041492

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 30-94
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF23832.2 best DUF7202 61.4 1.10e-16 80.0% 67.1%
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3cmbA00 2.40.400.10 Mainly Beta › Beta Barrel › Acetoacetate decarboxylase-like › Acetoacetate decarboxylase-like 0.69 60.0 4.01e-01 100.0% 37.7%
3ewkA03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.66 46.0 3.98e-01 78.5% 45.8%
3njaA02 2.10.70.100 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.65 44.0 5.01e-01 84.6% 100.0%
6kjuB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.64 46.0 3.83e-01 83.1% 42.7%
6em3x01 3.40.50.10480 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Brix domain 0.63 38.0 2.80e-01 80.0% 21.1%
4m4xA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.62 46.0 3.76e-01 80.0% 46.8%
3hx8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 45.0 3.66e-01 86.2% 39.8%
2v0uA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 43.0 3.39e-01 92.3% 33.6%
1uurA02 2.60.40.340 Mainly Beta › Sandwich › Immunoglobulin-like › Rel homology domain (RHD), DNA-binding domain 0.61 52.0 4.12e-01 93.8% 61.7%
8hbfB02 3.30.450.260 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem NO binding associated domain 0.60 41.0 3.25e-01 81.5% 34.6%
2vsmA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.60 50.0 3.10e-01 96.9% 22.0%
5odnC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 43.0 3.74e-01 78.5% 94.1%
4pz6A02 3.30.470.30 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › DNA ligase/mRNA capping enzyme 0.59 46.0 3.25e-01 90.8% 62.3%
1v3eA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.58 50.0 3.08e-01 100.0% 24.1%
1jkgB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 48.0 3.53e-01 98.5% 33.9%
3n0aA02 2.60.40.1110 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 47.0 3.83e-01 96.9% 87.4%
6rupA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 41.0 3.54e-01 80.0% 94.6%
5whzH02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 43.0 3.49e-01 81.5% 77.2%
4glaC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 45.0 4.06e-01 86.2% 98.9%
4pofA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 44.0 3.71e-01 83.1% 89.4%
5ek8A01 2.60.40.3330 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 45.0 3.67e-01 89.2% 67.5%
4bg7A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.55 42.0 3.72e-01 95.4% 56.1%
3e8tA00 3.15.10.30 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › TULIP domain 0.55 41.0 2.96e-01 84.6% 36.1%
3zpmA00 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.55 45.0 3.23e-01 95.4% 63.5%
1ue6D00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 44.0 3.77e-01 87.7% 94.2%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.54 47.0 3.62e-01 100.0% 48.1%
1eyqA02 3.50.70.10 Alpha Beta › 3-Layer(bba) Sandwich › Chalcone isomerase › 0.54 38.0 2.93e-01 81.5% 30.8%
2vl6A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 40.0 3.45e-01 83.1% 92.9%
5azpA02 2.20.200.10 Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.53 41.0 3.89e-01 89.2% 70.4%
1wydA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 41.0 3.55e-01 84.6% 82.4%
4pz7A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 42.0 3.44e-01 93.8% 56.9%
1flmA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 38.0 3.24e-01 81.5% 54.9%
1kf6A04 4.10.80.40 Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › succinate dehydrogenase protein domain 0.53 30.0 3.39e-01 78.5% 97.1%
3ty2A00 3.40.1210.10 Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase 0.52 36.0 2.54e-01 73.8% 46.8%
1pfoA02 3.30.1040.20 Alpha Beta › 2-Layer Sandwich › Carboxypeptidase Inhibitor; Chain A › 0.52 35.0 3.72e-01 81.5% 86.8%
2r76A00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.52 43.0 3.47e-01 95.4% 46.2%
3rd4B00 2.40.50.660 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 35.0 3.36e-01 80.0% 57.3%
4kghA00 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.51 38.0 2.89e-01 86.2% 41.5%
2uvaG09 2.40.128.700 Mainly Beta › Beta Barrel › Lipocalin › 0.51 43.0 3.68e-01 100.0% 93.1%
3nemA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 39.0 3.39e-01 84.6% 81.9%
2mp4A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.51 36.0 2.81e-01 78.5% 49.7%
4ep4A00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.51 42.0 3.18e-01 95.4% 56.6%
5h8yD02 3.30.413.10 Alpha Beta › 2-Layer Sandwich › Sulfite Reductase Hemoprotein; domain 1 › Sulfite Reductase Hemoprotein, domain 1 0.50 39.0 2.86e-01 95.4% 28.6%
3vpyA00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.50 37.0 2.96e-01 81.5% 79.3%
ECOD (57)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3626286 223.1.1.29 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_11 0.79 69.0 5.34e-01 98.5% 45.0%
3291030 223.1.1.40 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › Rv3651-like_middle 0.75 58.0 4.74e-01 86.2% 47.0%
3961411 223.1.1.40 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › Rv3651-like_middle 0.70 53.0 4.34e-01 90.8% 43.2%
3902105 223.1.1.2 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.66 49.0 3.85e-01 84.6% 37.1%
3781409 11.1.1.41 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_C 0.65 55.0 3.92e-01 93.8% 76.8%
3368394 4325.1.1.11 ↗ mixed a+b and a/b › YegP-like › YegP-like › YegP-like › PF27041 0.64 46.0 4.11e-01 100.0% 52.6%
3609391 206.1.3.12 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › TTL 0.62 54.0 3.41e-01 100.0% 44.0%
5004339 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 55.0 4.03e-01 100.0% 64.9%
3850354 243.3.1.1 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin 0.61 48.0 3.89e-01 87.7% 52.3%
3705073 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 52.0 4.43e-01 92.3% 92.0%
4865083 4010.1.1.2 ↗ a+b complex topology › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 0.61 51.0 4.10e-01 100.0% 55.6%
3618948 2.18.1.0 ↗ beta barrels › OB-fold › OB domain in putative lipoprotein BF3042-related proteins › OB domain in putative lipoprotein BF3042-related proteins 0.60 47.0 4.49e-01 84.6% 97.3%
3425464 5.1.3.54 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1668 0.60 51.0 3.23e-01 98.5% 31.2%
3525853 883.1.1.1 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.59 44.0 3.41e-01 84.6% 35.3%
139113 883.1.1.3 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › JHBP 0.59 44.0 3.11e-01 84.6% 33.0%
3775744 883.1.1.2 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C 0.57 45.0 3.63e-01 84.6% 49.2%
3475221 5.1.5.173 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, Beta-prop_VPS8, Beta-prop_WDR3_2nd 0.57 48.0 3.08e-01 96.9% 32.8%
5058885 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 50.0 3.80e-01 100.0% 70.6%
4964971 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 50.0 3.44e-01 100.0% 47.4%
3827703 5.1.4.550 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.57 47.0 3.06e-01 93.8% 34.5%
5025916 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 50.0 3.89e-01 100.0% 74.5%
4026848 5.1.3.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.56 47.0 3.14e-01 100.0% 27.2%
3191672 511.1.1.0 ↗ beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain 0.56 46.0 3.87e-01 93.8% 98.3%
2519670 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.55 43.0 3.58e-01 83.1% 75.2%
3604594 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 42.0 3.56e-01 81.5% 84.8%
4952879 2.1.1.80 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB 0.55 43.0 3.56e-01 83.1% 78.2%
3322652 844.1.1.5 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › DUF3527 0.55 44.0 3.06e-01 95.4% 86.1%
3489971 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 44.0 3.79e-01 98.5% 55.8%
3627567 883.1.1.15 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP+LBP_BPI_CETP_C 0.54 41.0 2.60e-01 86.2% 17.1%
3707549 5.1.3.28 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.54 43.0 2.80e-01 100.0% 45.3%
4987465 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 42.0 3.67e-01 83.1% 84.0%
3922154 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 41.0 3.37e-01 84.6% 74.4%
3270697 223.2.1.25 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Avl9 0.53 44.0 3.35e-01 93.8% 69.1%
3822726 5.1.4.550 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.53 41.0 2.73e-01 96.9% 18.5%
3394267 883.1.1.3 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › JHBP 0.53 40.0 2.85e-01 84.6% 33.2%
2845667 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.53 43.0 3.67e-01 89.2% 92.7%
4559431 331.22.1.2 ↗ a+b two layers › TBP-like › Outer membrane protein assembly factor BamC › Outer membrane protein assembly factor BamC › PF29358 0.53 42.0 2.98e-01 89.2% 28.2%
4068016 2.1.1.122 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB_1 0.53 43.0 3.64e-01 87.7% 99.0%
3207118 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 43.0 2.70e-01 98.5% 22.8%
5047377 243.1.1.28 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.52 36.0 2.97e-01 95.4% 35.0%
196538 7503.1.1.4 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › LptE 0.52 43.0 3.47e-01 95.4% 46.2%
3990037 2.1.1.168 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF1980_C 0.52 44.0 3.44e-01 93.8% 64.3%
2033779 243.1.1.28 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4440 0.52 37.0 3.11e-01 84.6% 40.2%
1721555 11.1.4.7 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › TTR-52 0.52 41.0 3.49e-01 93.8% 72.4%
4662986 7527.1.1.0 ↗ a/b three-layered sandwiches › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) › SurE-like/CoA-transferase family III (CaiB/BaiF) 0.52 35.0 2.55e-01 73.8% 50.9%
4251418 331.22.1.2 ↗ a+b two layers › TBP-like › Outer membrane protein assembly factor BamC › Outer membrane protein assembly factor BamC › PF29358 0.51 41.0 2.93e-01 90.8% 27.4%
3433806 5.1.2.29 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › DUF1668 0.51 44.0 3.07e-01 98.5% 32.9%
3812138 5.1.4.550 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.51 40.0 3.11e-01 93.8% 43.4%
3163625 7503.1.1.4 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › LptE 0.51 39.0 3.09e-01 89.2% 37.9%
4527565 2.1.1.168 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF1980_C 0.51 44.0 3.42e-01 95.4% 66.4%
3523092 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.51 39.0 3.19e-01 86.2% 61.5%
3789065 11.1.5.20 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › NDT80_PhoG 0.51 41.0 2.80e-01 92.3% 64.6%
3608538 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 40.0 2.98e-01 90.8% 39.0%
3974994 7503.1.1.4 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › LptE 0.50 40.0 3.01e-01 93.8% 34.1%
3498103 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.50 36.0 2.24e-01 80.0% 11.9%
3733008 2484.1.1.114 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Med13_C 0.50 41.0 2.69e-01 95.4% 20.3%
5037833 504.1.1.0 ↗ a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB 0.50 38.0 3.08e-01 87.7% 40.0%