←Back to structures

NC_047890.1__YP_009795452.1__HOS43_gp20__00020

Bact-Vir

NC_047890.1__YP_009795452.1__HOS43_gp20__00020

Identity

Accession:
NC_047890 ↗
Kingdom:
phage

Quality

82.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autonotataviridae› Ermolevavirus› Escherichia_phage_PGT2

TaxID: 2047782

Cluster

View cluster (33 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-96
PDB
Domain cluster: rep: GQ478086.1__ACZ64040.1__X__00021__D3-94
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1kz7C02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 54.0 4.76e-01 100.0% 89.1%
2gkpA00 3.40.1590.10 Alpha Beta › 3-Layer(aba) Sandwich › NMB0488-like fold › NMB0488-like 0.56 44.0 3.66e-01 83.7% 93.9%
1vavA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 44.0 3.36e-01 85.9% 52.7%
1vwxr00 3.30.390.110 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.55 46.0 4.22e-01 95.7% 77.6%
1ig8A02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 42.0 3.69e-01 82.6% 85.1%
3l50A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.54 39.0 3.46e-01 77.2% 88.2%
3mdqA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.53 39.0 3.62e-01 79.3% 84.6%
1dpgA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.53 38.0 2.67e-01 76.1% 86.7%
1hjrA00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.53 36.0 3.10e-01 71.7% 59.5%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.53 42.0 3.75e-01 89.1% 95.7%
4hkqA04 3.10.20.370 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.51 36.0 3.92e-01 75.0% 90.8%
4zwnB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.50 38.0 2.68e-01 80.4% 78.8%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3945393 7089.1.1.2 ↗ a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › DUF5405 0.75 57.0 6.05e-01 78.3% 100.0%
4294687 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.57 41.0 3.81e-01 75.0% 72.2%
3545249 220.1.1.12 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Myosin_TH1 0.57 46.0 3.53e-01 88.0% 42.9%
4010765 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.57 41.0 3.72e-01 76.1% 76.0%
4564098 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.56 40.0 3.67e-01 73.9% 66.7%
4505784 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.56 40.0 3.73e-01 76.1% 79.2%
4222773 4076.2.1.0 ↗ a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like 0.56 40.0 3.11e-01 75.0% 33.8%
5046724 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.56 40.0 3.72e-01 75.0% 79.1%
3689053 2484.1.1.39 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Fumble 0.55 43.0 3.69e-01 84.8% 63.3%
4108643 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 48.0 3.17e-01 96.7% 44.7%
4981234 896.1.1.0 ↗ a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related 0.54 35.0 3.95e-01 79.3% 90.8%
3727890 5.1.4.97 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Rrn6_beta-prop 0.54 48.0 2.99e-01 97.8% 28.9%
4377115 5084.3.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter 0.54 38.0 2.15e-01 72.8% 18.7%
3772065 220.1.1.132 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › KRIT1_FRMD8_FERM_C 0.54 48.0 4.49e-01 100.0% 99.1%
4200618 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.54 38.0 3.60e-01 75.0% 78.3%
3636447 2484.1.1.39 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Fumble 0.54 41.0 2.78e-01 84.8% 23.5%
3712071 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.53 40.0 2.89e-01 82.6% 91.2%
3380840 220.1.1.180 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF7642 0.53 45.0 4.32e-01 95.7% 94.5%
3575357 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.52 47.0 3.18e-01 100.0% 41.8%
4240117 2484.1.1.25 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvC 0.52 37.0 3.06e-01 75.0% 57.8%
3622828 5.1.4.319 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR11_1st 0.52 46.0 3.03e-01 96.7% 34.3%
4218926 2484.1.1.174 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › UvrC_RNaseH 0.51 38.0 3.50e-01 78.3% 78.3%
3586673 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 46.0 3.00e-01 96.7% 33.4%
3698801 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.51 41.0 2.72e-01 88.0% 56.7%
3936024 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 46.0 3.18e-01 100.0% 43.5%
3829242 219.1.1.113 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › PF28979 0.50 44.0 3.16e-01 97.8% 80.0%
3315568 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.50 36.0 4.00e-01 79.3% 100.0%
3278560 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 40.0 3.67e-01 88.0% 97.6%