Back to structures

NC_047897.1__YP_009795967.1__HOS50_gp095__00120

Bact-Vir

NC_047897.1__YP_009795967.1__HOS50_gp095__00120

Identity

Accession:
NC_047897 ↗
Kingdom:
phage

Quality

87.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-39
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kxpA01 3.30.1140.60 Alpha Beta › 2-Layer Sandwich › Ribosomal protein S3 C-terminal domain › F-actin capping protein, alpha subunit 0.70 57.0 4.26e-01 100.0% 42.1%
3mqgA02 2.20.70.110 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.70 55.0 5.54e-01 100.0% 97.4%
1jj2Y00 2.20.25.30 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.68 55.0 4.56e-01 94.7% 52.1%
2pziB02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.65 55.0 3.78e-01 100.0% 53.8%
7zj3D01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.64 51.0 4.15e-01 94.7% 55.6%
3m7nA03 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.64 46.0 4.71e-01 89.5% 91.2%
4oj5B01 3.30.2020.50 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.62 43.0 3.49e-01 73.7% 64.6%
2jneA00 2.10.290.10 Mainly Beta › Ribbon › Rubredoxin-like › YfgJ-like 0.58 43.0 3.88e-01 97.4% 98.6%
2xzm901 6.20.50.180 Special › Other non-globular › N-terminal domain of TfIIb › 0.58 41.0 3.59e-01 86.8% 51.4%
4fxtA01 2.60.40.1120 Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain 0.56 44.0 3.59e-01 97.4% 89.5%
4l8nA03 3.30.160.670 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 38.0 2.59e-01 73.7% 63.4%
1szpB02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 42.0 2.78e-01 94.7% 94.8%
1ei5A02 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.53 44.0 3.55e-01 100.0% 69.5%
5i7pA02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.53 42.0 3.98e-01 97.4% 89.6%
2drpA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.52 34.0 3.57e-01 73.7% 76.5%
ECOD (84)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4960851 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.92 73.0 7.62e-01 86.8% 94.3%
5029687 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.92 81.0 7.72e-01 100.0% 95.6%
4978678 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.91 72.0 6.32e-01 86.8% 60.0%
3739700 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.90 66.0 7.11e-01 78.9% 100.0%
3681134 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.90 71.0 6.47e-01 86.8% 66.0%
5030549 375.1.3.1 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF1922 0.89 74.0 6.49e-01 97.4% 63.6%
4973787 375.1.1.11 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_S27 0.89 69.0 5.77e-01 86.8% 50.8%
5073026 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.89 79.0 7.19e-01 100.0% 90.0%
4969798 375.1.3.3 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF5817 0.89 72.0 6.33e-01 94.7% 61.8%
4947213 375.1.3.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 0.89 72.0 6.33e-01 94.7% 61.8%
4968925 375.1.1.356 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PF29210 0.88 78.0 7.75e-01 100.0% 95.0%
4945444 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.88 72.0 7.42e-01 89.5% 97.1%
4991529 375.1.3.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 0.87 72.0 6.17e-01 97.4% 58.3%
3328437 375.1.1.139 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › EDR4-like_1st 0.87 71.0 7.01e-01 89.5% 85.0%
3826688 375.1.1.139 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › EDR4-like_1st 0.87 62.0 6.80e-01 76.3% 100.0%
4028456 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.87 76.0 7.23e-01 100.0% 88.9%
3786601 375.1.1.200 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-LSD1 0.87 67.0 6.89e-01 84.2% 91.4%
3678606 375.1.1.212 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_FGT1_2 0.86 67.0 6.94e-01 86.8% 94.3%
5060529 375.1.3.3 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF5817 0.86 71.0 5.78e-01 94.7% 50.0%
3606741 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.86 65.0 6.73e-01 84.2% 91.4%
5076006 109.4.1.195 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_11 0.86 68.0 4.01e-01 89.5% 12.5%
5034126 375.1.3.3 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF5817 0.86 71.0 6.06e-01 97.4% 58.3%
3507653 375.4.1.0 few secondary structure elements › Rubredoxin-like › Nucleolar RNA-binding protein Nop10-like › Nucleolar RNA-binding protein Nop10-like 0.86 67.0 4.32e-01 86.8% 20.9%
4028457 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.86 62.0 6.71e-01 78.9% 100.0%
3380132 375.1.1.200 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-LSD1 0.86 68.0 6.75e-01 89.5% 87.5%
5067229 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.85 66.0 6.31e-01 86.8% 73.3%
4979347 375.1.3.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 0.85 70.0 5.67e-01 94.7% 50.0%
5047885 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.84 70.0 6.63e-01 100.0% 77.8%
4015648 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.84 62.0 6.51e-01 81.6% 93.9%
5078006 375.1.3.1 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF1922 0.84 68.0 5.61e-01 94.7% 50.0%
4995783 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.84 69.0 6.80e-01 97.4% 87.5%
3802581 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.84 64.0 6.63e-01 86.8% 94.3%
5041477 375.1.3.3 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF5817 0.83 67.0 5.82e-01 97.4% 58.3%
3467249 376.1.4.4 few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › PF26200 0.83 70.0 5.86e-01 100.0% 55.4%
5035898 375.1.3.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 0.83 66.0 5.70e-01 97.4% 56.7%
3362800 375.1.1.193 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_FGT1_1 0.83 66.0 6.29e-01 89.5% 77.8%
3683940 375.1.1.200 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-LSD1 0.83 60.0 5.92e-01 78.9% 75.0%
5047273 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.82 69.0 6.81e-01 100.0% 90.0%
4978303 375.10.1.0 few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha 0.82 68.0 5.98e-01 94.7% 63.6%
3303263 376.1.6.3 few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › zf-LSD1 0.82 66.0 6.58e-01 92.1% 95.0%
4981108 375.1.1.331 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF5817 0.82 65.0 6.28e-01 97.4% 77.8%
3437434 375.1.1.200 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-LSD1 0.81 60.0 6.19e-01 84.2% 91.4%
4970821 375.1.3.1 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF1922 0.81 66.0 5.42e-01 94.7% 50.0%
3656347 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.81 63.0 6.45e-01 89.5% 100.0%
5075187 375.1.3.1 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF1922 0.80 63.0 5.54e-01 94.7% 58.3%
3671234 375.1.1.200 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-LSD1 0.80 62.0 6.32e-01 89.5% 97.1%
3419900 375.1.1.200 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-LSD1 0.79 60.0 6.15e-01 86.8% 94.3%
3270748 376.1.6.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR 0.79 66.0 5.56e-01 100.0% 55.4%
3537482 376.1.4.2 few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR_1 0.79 65.0 6.01e-01 100.0% 72.0%
3179128 375.1.1.211 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ima1_N 0.79 64.0 6.35e-01 92.1% 92.5%
4968629 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.79 65.0 5.79e-01 92.1% 72.2%
3907697 376.1.4.2 few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR_1 0.78 64.0 5.19e-01 100.0% 48.0%
3825063 1067.1.1.0 few secondary structure elements › pheromone Ep-1 › pheromone Ep-1 › pheromone Ep-1 0.78 60.0 6.22e-01 92.1% 94.3%
4972401 2484.1.1.124 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 0.78 69.0 4.24e-01 100.0% 26.0%
3514931 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.78 61.0 6.04e-01 89.5% 85.0%
5036396 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.77 59.0 5.95e-01 86.8% 87.2%
3846875 376.1.4.2 few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR_1 0.77 63.0 5.37e-01 100.0% 55.4%
5017725 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.76 66.0 4.14e-01 100.0% 20.0%
4999482 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.75 66.0 4.08e-01 100.0% 18.6%
3581878 376.1.6.1 few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR 0.75 66.0 5.53e-01 100.0% 58.5%
3600464 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.75 60.0 3.56e-01 92.1% 22.0%
5060491 5086.1.1.0 alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.75 61.0 4.31e-01 97.4% 30.0%
4979574 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.74 64.0 4.17e-01 100.0% 23.5%
4978165 2484.1.1.124 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 0.74 63.0 3.99e-01 100.0% 20.0%
5077070 375.1.3.1 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF1922 0.71 55.0 4.88e-01 92.1% 56.7%
4945128 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.71 57.0 5.92e-01 92.1% 100.0%
5066735 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.69 55.0 5.14e-01 89.5% 72.0%
4122844 375.1.1.213 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_TiaS 0.64 50.0 4.95e-01 89.5% 87.5%
3992738 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 47.0 4.54e-01 97.4% 71.1%
3609075 375.1.1.4 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-RanBP 0.63 50.0 3.76e-01 97.4% 35.0%
4255854 4294.1.1.8 few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › PF27112 0.63 52.0 4.83e-01 100.0% 76.0%
4439164 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.62 46.0 2.94e-01 94.7% 14.1%
3527717 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.62 46.0 4.30e-01 86.8% 92.5%
5049039 207.1.1.95 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14 0.62 45.0 2.62e-01 78.9% 7.6%
3188758 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.62 48.0 4.58e-01 86.8% 91.1%
4282792 375.1.1.44 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-NADH-PPase 0.61 43.0 4.43e-01 94.7% 88.6%
3590612 4294.1.1.0 few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like 0.60 48.0 4.78e-01 100.0% 92.5%
5055298 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 41.0 3.75e-01 78.9% 50.0%
4056467 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 43.0 3.94e-01 92.1% 60.0%
4969991 375.1.1.213 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_TiaS 0.58 42.0 4.18e-01 94.7% 75.6%
3980811 375.1.1.60 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PriA_CRR 0.58 41.0 3.85e-01 92.1% 75.0%
3584285 5.1.11.15 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › DPPIV_N 0.51 38.0 2.28e-01 100.0% 13.6%
3189250 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.50 40.0 3.52e-01 100.0% 87.7%
3790194 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.50 40.0 3.87e-01 92.1% 100.0%