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NC_047904.1__YP_009796735.1__HOS57_gp13__00013

Bact-Vir

NC_047904.1__YP_009796735.1__HOS57_gp13__00013

Identity

Accession:
NC_047904 ↗
Kingdom:
phage

Quality

89.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Abbeymikolonvirus› Streptomyces_phage_AbbeyMikolon

TaxID: 2059880

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-86
PDB
Domain cluster: rep: MK240575.1__AZU97388.1__X__00028__D24-95
D2 medium residues 88-144
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2o5iN05 1.10.40.90 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › 0.60 48.0 4.94e-01 96.5% 100.0%
3vskA02 1.10.10.1230 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Penicillin-binding protein, N-terminal non-catalytic domain, head sub-domain 0.56 47.0 3.58e-01 96.5% 53.6%
2fi1A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.53 43.0 4.22e-01 89.5% 90.6%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3914404 1025.1.1.1 ↗ alpha bundles › Stonustoxin helical domain › Stonustoxin helical domain › Stonustoxin helical domain › Stonustoxin_helical 0.54 43.0 3.47e-01 94.7% 72.3%
D3 medium residues 152-214
PDB
Domain cluster: representative
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8dgfB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 41.0 2.96e-01 71.4% 59.7%
3r5xA01 3.40.50.20 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 43.0 3.88e-01 77.8% 80.0%
5ceeA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 38.0 2.62e-01 76.2% 35.8%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5036394 101.1.9.152 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_28 0.71 50.0 3.61e-01 74.6% 27.6%
3564419 603.1.1.98 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › SNARE, Syntaxin_2 0.63 44.0 3.01e-01 73.0% 78.1%
3174372 4001.1.1.0 ↗ a+b duplicates or obligate multimers › a+b domain in cullin-like proteins › a+b domain in cullin-like proteins › a+b domain in cullin-like proteins 0.62 44.0 3.74e-01 77.8% 43.5%
3509351 109.3.1.2 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.52 42.0 2.68e-01 98.4% 79.8%