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NC_047911.1__YP_009797206.1__HOS64_gp15__00015

Bact-Vir

NC_047911.1__YP_009797206.1__HOS64_gp15__00015

Identity

Accession:
NC_047911 ↗
Kingdom:
phage

Quality

54.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lagaffevirus› Faecalibacterium_phage_FP_Lagaffe

TaxID: 2070183

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1185-1261
PDB
D2 medium residues 38-122
PDB
D3 medium residues 123-197
PDB
D4 medium residues 255-350_492-504
PDB
Domain cluster: rep: MG835450.1__AUV61427.1__phiPsal1_018__00018__D33-169
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF10145.15 best PhageMin_Tail 67.4 2.40e-18 91.7% 48.8%
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1s8nA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 39.0 5.18e-01 89.0% 96.6%
6wshA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 36.0 4.95e-01 86.2% 94.5%
2a6hF01 1.20.120.1810 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.71 49.0 4.09e-01 70.6% 98.9%
6kd7A00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.63 48.0 3.48e-01 81.7% 94.8%
1wtjB01 1.10.1530.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.62 38.0 4.06e-01 81.7% 69.1%
2g8yA01 1.10.1530.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.62 38.0 3.85e-01 81.7% 60.2%
3kraC00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.61 48.0 3.68e-01 87.2% 93.0%
2azjA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.60 47.0 3.57e-01 85.3% 93.5%
3lomA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.60 47.0 3.52e-01 85.3% 92.7%
1xrhD01 1.10.1530.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.59 39.0 4.03e-01 81.7% 69.9%
1dcnA03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.59 33.0 3.85e-01 71.6% 80.6%
3i0pA01 1.10.1530.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.58 39.0 3.94e-01 81.7% 67.6%
3m1tA00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.58 46.0 3.56e-01 87.2% 55.4%
1vbiA01 1.10.1530.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.58 38.0 3.93e-01 81.7% 69.9%
1fkaG00 1.10.455.10 Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S7 › Ribosomal protein S7/S5 0.58 47.0 4.47e-01 88.1% 89.1%
5jfqB00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.57 44.0 3.30e-01 84.4% 97.1%
5xs2B02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.56 42.0 3.95e-01 78.9% 97.7%
3vr4B04 1.10.1140.10 Mainly Alpha › Orthogonal Bundle › Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain; Chain D, domain3 › Bovine Mitochondrial F1-atpase; Atp Synthase Beta Chain; Chain D, domain 3 0.55 43.0 3.95e-01 86.2% 98.7%
2bl2A00 1.20.120.610 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › lithium bound rotor ring of v- atpase 0.54 42.0 3.75e-01 83.5% 79.5%
2f2cA02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.54 39.0 4.04e-01 77.1% 100.0%
3godB02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.53 38.0 3.12e-01 73.4% 86.5%
2pq7A00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.53 38.0 3.35e-01 76.1% 90.2%
1rfzA00 1.10.3760.10 Mainly Alpha › Orthogonal Bundle › YutG-like › PgpA-like 0.53 34.0 3.05e-01 98.2% 43.9%
1oshA00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.52 40.0 3.29e-01 82.6% 75.0%
4bemJ00 1.20.120.610 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › lithium bound rotor ring of v- atpase 0.52 36.0 3.11e-01 72.5% 89.5%
3b4qA00 1.10.1200.100 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › conserved protein domain from corynebacterium diphtheriae 0.51 38.0 4.19e-01 96.3% 100.0%
1yowA00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.50 39.0 3.11e-01 83.5% 75.7%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4032310 159.1.2.6 ↗ alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PhageMin_Tail 0.98 91.0 7.98e-01 100.0% 70.0%
3941716 159.1.2.6 ↗ alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PhageMin_Tail 0.92 78.0 7.26e-01 88.1% 79.2%
3981280 159.1.2.6 ↗ alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PhageMin_Tail 0.87 78.0 6.98e-01 94.5% 82.8%
3951854 103.12.1.1 ↗ alpha arrays › RuvA-C › ANTAR domain › ANTAR domain › ANTAR 0.74 39.0 5.09e-01 89.0% 93.3%
3960463 103.12.1.0 ↗ alpha arrays › RuvA-C › ANTAR domain › ANTAR domain 0.73 38.0 4.93e-01 86.2% 91.7%
3980709 103.4.1.27 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › TMP_2 0.70 64.0 5.55e-01 98.2% 86.9%
3278934 103.12.1.1 ↗ alpha arrays › RuvA-C › ANTAR domain › ANTAR domain › ANTAR 0.70 38.0 4.94e-01 79.8% 96.7%
3287744 103.12.1.1 ↗ alpha arrays › RuvA-C › ANTAR domain › ANTAR domain › ANTAR 0.69 37.0 4.82e-01 89.9% 95.0%
4030882 159.1.2.6 ↗ alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PhageMin_Tail 0.68 60.0 4.82e-01 96.3% 73.8%
5004668 159.1.2.0 ↗ alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related 0.67 54.0 4.78e-01 88.1% 65.6%
3256076 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.65 46.0 5.10e-01 82.6% 95.3%
3963765 159.1.2.5 ↗ alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › TMP_3 0.65 59.0 4.90e-01 100.0% 80.0%
4935903 141.1.1.1 ↗ alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › polyprenyl_synt 0.64 49.0 3.44e-01 81.7% 79.6%
4986459 159.1.2.0 ↗ alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related 0.64 53.0 4.76e-01 91.7% 71.0%
2527057 141.1.1.1 ↗ alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › polyprenyl_synt 0.63 48.0 3.48e-01 81.7% 94.8%
3935845 3238.1.1.1 ↗ alpha superhelices › Mitochondrial mTERF-like › Mitochondrial mTERF › Mitochondrial mTERF › mTERF 0.62 50.0 3.80e-01 88.1% 42.2%
3826202 3238.1.1.1 ↗ alpha superhelices › Mitochondrial mTERF-like › Mitochondrial mTERF › Mitochondrial mTERF › mTERF 0.61 48.0 3.58e-01 83.5% 43.1%
3603382 159.1.2.0 ↗ alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related 0.58 49.0 4.16e-01 93.6% 89.7%
3708822 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.58 41.0 3.82e-01 74.3% 80.0%
3279913 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.55 48.0 4.05e-01 100.0% 68.9%
5022856 7014.1.1.1 ↗ alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA 0.54 32.0 3.15e-01 74.3% 51.6%
3303386 5050.1.1.15 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Nodulin-like 0.52 42.0 3.28e-01 88.1% 62.9%
4946659 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.51 39.0 3.90e-01 79.8% 86.4%
3223392 188.1.1.1 ↗ alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep 0.50 40.0 3.09e-01 88.1% 90.4%
3983527 5038.2.1.1 ↗ alpha superhelices › Cytochrome c oxidase subunit I-like › MAPEG domain-like › MAPEG domain-like › MAPEG 0.50 37.0 3.55e-01 80.7% 91.9%
D5 medium residues 351-406
PDB
Domain cluster: rep: MK994522__QGH71189.1__X__00033__D194-260
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF10145.15 best PhageMin_Tail 34.3 3.20e-08 100.0% 27.4%
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1kv9A02 1.10.760.10 Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain 0.65 45.0 3.70e-01 73.2% 83.5%
1cukA03 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.65 50.0 5.30e-01 96.4% 100.0%
2kxeA00 1.10.8.800 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › D-family DNA polymerase, DP1 subunit N-terminal domain 0.59 48.0 4.48e-01 92.9% 75.0%
1omvA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.58 44.0 3.92e-01 91.1% 57.0%
2iz6A00 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 49.0 3.64e-01 100.0% 94.3%
2g8lA02 1.10.285.20 Mainly Alpha › Orthogonal Bundle › Glutamate Dehydrogenase; Chain A, domain 3 › Uncharacterised protein PF01937, DUF89, domain 2 0.56 47.0 4.55e-01 100.0% 87.7%
3t69A02 3.30.420.310 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, C-terminal domain 0.56 45.0 3.12e-01 94.6% 27.0%
2ewfA02 1.20.1270.310 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.56 44.0 4.00e-01 91.1% 79.0%
1bvsA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.55 41.0 3.87e-01 83.9% 85.7%
1ax8A00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.53 40.0 3.04e-01 80.4% 76.9%
1r69A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.52 39.0 3.83e-01 83.9% 85.7%
1kdgA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 41.0 2.64e-01 96.4% 96.7%
1fi4A02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.50 38.0 2.65e-01 82.1% 25.3%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5040543 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.76 64.0 6.49e-01 96.4% 94.5%
3502321 103.1.1.86 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › PF28543 0.67 54.0 5.19e-01 92.9% 84.6%
2320936 103.17.1.0 ↗ alpha arrays › RuvA-C › HMG-CoA reductase flap domain › HMG-CoA reductase flap domain 0.66 48.0 5.05e-01 94.6% 93.9%
4489811 103.17.1.0 ↗ alpha arrays › RuvA-C › HMG-CoA reductase flap domain › HMG-CoA reductase flap domain 0.64 50.0 5.20e-01 94.6% 100.0%
4938496 103.17.1.0 ↗ alpha arrays › RuvA-C › HMG-CoA reductase flap domain › HMG-CoA reductase flap domain 0.63 48.0 4.85e-01 100.0% 89.1%
4976690 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.63 48.0 4.94e-01 94.6% 98.0%
4442514 103.1.1.6 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C 0.63 48.0 4.94e-01 96.4% 98.0%
4033799 4230.1.1.3 ↗ alpha arrays › DnaD domain › DnaD domain › DnaD domain › DnaB_2 0.60 44.0 4.58e-01 85.7% 94.0%
3448200 2004.1.1.56 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › NB-ARC 0.58 50.0 3.26e-01 100.0% 97.8%
3284812 131.1.1.0 ↗ alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like 0.56 47.0 3.38e-01 100.0% 52.6%
3924772 7579.1.1.70 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DUF1057 0.52 41.0 2.58e-01 87.5% 45.2%
3279033 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.50 40.0 3.64e-01 87.5% 94.7%
3290481 3687.1.1.0 ↗ alpha bundles › NADPH-cytochrome p450 reductase helical insertion domain › NADPH-cytochrome p450 reductase helical insertion domain › NADPH-cytochrome p450 reductase helical insertion domain 0.50 37.0 3.20e-01 87.5% 48.0%
D6 medium residues 407-491
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4fevA02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.64 46.0 3.69e-01 76.5% 86.0%
3hzsA00 1.10.3810.10 Mainly Alpha › Orthogonal Bundle › Penicillin binding protein transpeptidase fold › Biosynthetic peptidoglycan transglycosylase-like 0.62 44.0 3.34e-01 75.3% 88.0%
2debA03 3.30.559.70 Alpha Beta › 2-Layer Sandwich › Chloramphenicol Acetyltransferase › Choline/Carnitine o-acyltransferase, domain 2 0.60 50.0 3.46e-01 90.6% 74.5%
1sqgA01 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.57 47.0 4.05e-01 94.1% 93.6%
3vusB00 3.20.20.370 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase/deacetylase 0.56 41.0 2.98e-01 78.8% 27.7%
3oyzA01 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.54 43.0 3.05e-01 85.9% 87.3%
7szaA01 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.53 41.0 3.69e-01 83.5% 75.2%
1dq3A02 3.30.160.90 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 38.0 3.95e-01 88.2% 89.5%
4af8A00 3.40.50.12660 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 42.0 2.91e-01 96.5% 71.5%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4840 195.1.1.1 ↗ alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.57 47.0 4.05e-01 94.1% 94.3%
3624825 323.1.1.6 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › Carn_acyltransf 0.55 45.0 3.32e-01 90.6% 84.6%
3308663 601.3.1.11 ↗ alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › PHD_Oberon 0.55 40.0 3.48e-01 81.2% 91.7%
4993969 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.53 37.0 3.79e-01 75.3% 94.1%
3240704 109.4.1.844 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ZSWIM4-8_C 0.53 39.0 2.35e-01 81.2% 20.3%
3285469 316.1.1.21 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › Aminoglyc_resit 0.51 38.0 3.04e-01 82.4% 87.0%
D7 medium residues 612-737
PDB
D8 medium residues 938-1004
PDB
D9 medium residues 1103-1169
PDB