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NC_047925.1__YP_009798258.1__HOS79_gp038__00038

Bact-Vir

NC_047925.1__YP_009798258.1__HOS79_gp038__00038

Identity

Accession:
NC_047925 ↗
Kingdom:
phage

Quality

80.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lenusvirus› Lactobacillus_phage_Nyseid

TaxID: 2079432

Cluster

View cluster (12 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-84
PDB
Domain cluster: rep: MK504444.1__QBJ03553.1__UCC3521_0015__00015__D2-74
CATH (36)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1srqA01 3.30.1120.160 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.67 50.0 4.25e-01 79.5% 58.0%
3k44B00 3.30.2450.30 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.65 46.0 3.84e-01 73.5% 89.3%
1b7eA01 3.90.350.10 Alpha Beta › Alpha-Beta Complex › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 › Transposase Inhibitor Protein From Tn5; Chain A, domain 1 0.64 45.0 3.21e-01 72.3% 82.5%
2hc5A01 3.30.160.170 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like 0.63 46.0 4.42e-01 78.3% 65.3%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 47.0 5.28e-01 88.0% 100.0%
1dhkB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 52.0 3.94e-01 92.8% 92.8%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 42.0 4.78e-01 84.3% 100.0%
4dm5A00 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.58 43.0 4.23e-01 89.2% 73.6%
2w38A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.57 52.0 3.47e-01 100.0% 99.7%
2fp8B00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.57 44.0 3.03e-01 83.1% 90.4%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 41.0 4.61e-01 84.3% 100.0%
6i8xA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 43.0 3.62e-01 84.3% 94.6%
1atiB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.56 44.0 4.06e-01 85.5% 96.4%
1httA02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.56 43.0 4.15e-01 84.3% 99.0%
2im9A02 2.30.260.10 Mainly Beta › Roll › putative xylanase like fold › putative xylanase like domain 0.56 48.0 4.07e-01 100.0% 96.6%
1n27A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 45.0 4.32e-01 88.0% 93.8%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 39.0 4.40e-01 84.3% 100.0%
3sc7X01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 49.0 3.28e-01 100.0% 96.7%
8gn6A01 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.54 49.0 3.24e-01 100.0% 89.5%
4jrnA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 40.0 3.41e-01 79.5% 75.2%
4hfsA00 2.60.120.1270 Mainly Beta › Sandwich › Jelly Rolls › 0.54 46.0 3.61e-01 100.0% 90.1%
4mnrA02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.54 37.0 2.61e-01 73.5% 67.1%
2w5nA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.53 47.0 3.11e-01 100.0% 85.8%
1t3yA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.53 39.0 3.38e-01 78.3% 76.3%
4qdgA02 2.60.40.2090 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 38.0 3.25e-01 74.7% 85.2%
3q5zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 40.0 3.51e-01 79.5% 74.4%
1whqA01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.53 38.0 4.02e-01 74.7% 87.3%
6p2lA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 45.0 2.90e-01 92.8% 46.5%
3pvlA04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 38.0 3.60e-01 75.9% 78.8%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 42.0 4.47e-01 85.5% 100.0%
2w1zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 39.0 3.31e-01 79.5% 75.9%
7rd0A02 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.52 42.0 2.87e-01 89.2% 25.2%
1t17A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 40.0 3.41e-01 85.5% 89.2%
2lt1A00 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.51 40.0 4.23e-01 95.2% 96.0%
2wozA00 2.120.10.80 Mainly Beta › 6 Propeller › Neuraminidase › Kelch-type beta propeller 0.51 44.0 3.00e-01 96.4% 88.3%
3gocA00 3.30.2170.10 Alpha Beta › 2-Layer Sandwich › archaeoglobus fulgidus dsm 4304 fold › archaeoglobus fulgidus dsm 4304 superfamily 0.50 43.0 3.18e-01 96.4% 72.8%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3273306 4026.1.1.0 ↗ a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.75 57.0 4.66e-01 80.7% 50.7%
4564828 4026.1.1.1 ↗ a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › Rap-GAP_dimer 0.72 54.0 4.35e-01 79.5% 53.5%
3531867 4026.1.1.1 ↗ a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › Rap-GAP_dimer 0.71 53.0 4.13e-01 79.5% 46.1%
3536447 4026.1.1.1 ↗ a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › Rap-GAP_dimer 0.69 51.0 4.27e-01 79.5% 56.6%
3388188 206.1.3.43 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › DUF6815 0.69 60.0 4.28e-01 96.4% 42.5%
3987799 4221.1.1.1 ↗ a+b two layers › YkuJ-like › YkuJ-like › YkuJ-like › DUF1797 0.65 48.0 5.11e-01 78.3% 100.0%
3258675 4026.1.1.0 ↗ a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.65 48.0 4.09e-01 79.5% 59.3%
4826815 10.1.1.14 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › CoV_S1 0.65 55.0 4.31e-01 92.8% 75.9%
3164017 9.11.1.0 ↗ beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like 0.65 47.0 4.58e-01 75.9% 94.4%
5032977 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 52.0 5.36e-01 89.2% 95.0%
3597599 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.64 51.0 4.79e-01 85.5% 85.0%
4416182 241.15.1.3 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › SPC25 0.64 46.0 4.26e-01 74.7% 81.0%
3544618 4292.2.1.0 ↗ a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.63 46.0 4.64e-01 78.3% 75.3%
3167073 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.63 47.0 3.83e-01 79.5% 85.6%
3225194 11.10.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.63 47.0 4.05e-01 78.3% 97.7%
4135259 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.63 47.0 5.26e-01 86.7% 100.0%
3183463 241.15.1.3 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › SPC25 0.63 47.0 4.33e-01 80.7% 80.9%
3985617 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.62 44.0 4.70e-01 77.1% 85.7%
3733718 4292.2.1.0 ↗ a+b two layers › FlaG-like › MAGUK binding stalk (MBS) domain › MAGUK binding stalk (MBS) domain 0.62 45.0 4.48e-01 78.3% 74.1%
3768941 5.1.4.172 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_CAF1B_HIR1 0.61 47.0 2.81e-01 83.1% 19.7%
2771632 4252.1.1.0 ↗ beta barrels › AttH-like › AttH-like › AttH-like 0.60 52.0 4.04e-01 97.6% 95.2%
4373556 4252.1.1.0 ↗ beta barrels › AttH-like › AttH-like › AttH-like 0.60 52.0 3.99e-01 96.4% 96.3%
3845351 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.59 46.0 4.55e-01 84.3% 78.9%
4104219 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.59 44.0 4.88e-01 86.7% 100.0%
4947855 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 48.0 3.04e-01 90.4% 39.1%
3664013 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.58 46.0 3.12e-01 84.3% 85.1%
3710675 375.1.1.7 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TFIIS_C 0.58 34.0 4.15e-01 73.5% 100.0%
363009 5.1.3.26 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_2 0.58 52.0 3.45e-01 100.0% 95.2%
3241917 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.58 46.0 3.19e-01 88.0% 99.0%
3784090 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 46.0 2.90e-01 85.5% 30.0%
3963175 4252.1.1.0 ↗ beta barrels › AttH-like › AttH-like › AttH-like 0.57 44.0 3.43e-01 83.1% 84.3%
3607940 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 47.0 3.00e-01 89.2% 57.1%
3832491 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.56 50.0 3.31e-01 96.4% 76.2%
3735975 243.5.1.0 ↗ a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region 0.56 41.0 4.10e-01 77.1% 91.8%
3510695 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.56 40.0 4.08e-01 74.7% 80.0%
3488114 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 43.0 3.78e-01 89.2% 56.7%
2491389 5.1.3.19 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira 0.56 40.0 3.19e-01 77.1% 54.1%
3364812 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.55 48.0 3.45e-01 95.2% 56.5%
3622053 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 45.0 4.28e-01 92.8% 81.0%
3433806 5.1.2.29 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › DUF1668 0.55 44.0 3.23e-01 88.0% 45.3%
5014317 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.53 39.0 4.00e-01 77.1% 95.0%
3440964 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.53 47.0 3.12e-01 96.4% 77.1%
3268410 5.1.3.135 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1, Kelch_KLHDC2_KLHL20_DRC7, Beta-prop_ATRN-LZTR1 0.53 46.0 2.99e-01 95.2% 47.6%
3427602 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.53 46.0 3.13e-01 97.6% 75.6%
3598862 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 38.0 3.38e-01 75.9% 77.5%
3455310 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 47.0 3.16e-01 100.0% 96.8%
3826655 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.52 45.0 3.10e-01 96.4% 74.5%
3641841 5.1.3.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 0.51 45.0 3.09e-01 100.0% 95.3%
5033551 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 45.0 2.93e-01 98.8% 81.0%
3818556 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.51 45.0 2.99e-01 96.4% 73.2%
3361969 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.51 44.0 3.03e-01 97.6% 79.4%
3529982 5.1.4.156 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Ge1_WD40 0.51 44.0 2.81e-01 100.0% 70.0%
4976136 331.10.2.0 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.50 36.0 3.52e-01 78.3% 82.1%
3232550 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.50 38.0 3.79e-01 81.9% 85.9%
3359195 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.50 43.0 2.93e-01 97.6% 76.6%