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NC_047925.1__YP_009798259.1__HOS79_gp039__00039

Bact-Vir

NC_047925.1__YP_009798259.1__HOS79_gp039__00039

Identity

Accession:
NC_047925 ↗
Kingdom:
phage

Quality

84.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lenusvirus› Lactobacillus_phage_Nyseid

TaxID: 2079432

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-81
PDB
Domain cluster: rep: MK504444.1__QBJ03553.1__UCC3521_0015__00015__D2-74
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4a7kA03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.68 54.0 4.31e-01 87.0% 94.3%
2kieA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.64 50.0 4.28e-01 84.4% 69.4%
7oufB01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.64 44.0 3.57e-01 72.7% 58.4%
3wewA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.63 44.0 3.12e-01 72.7% 91.4%
2hc5A01 3.30.160.170 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like 0.62 49.0 4.56e-01 85.7% 76.5%
4dm5A00 3.30.1450.10 Alpha Beta › 2-Layer Sandwich › Beta-lactamase Inhibitory Protein; Chain:B, domain 1 › 0.61 42.0 4.03e-01 77.9% 62.1%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.61 47.0 4.32e-01 84.4% 81.7%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.61 42.0 4.28e-01 90.9% 72.7%
3v0aB04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.60 51.0 4.10e-01 94.8% 96.8%
3pubA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.60 52.0 4.13e-01 97.4% 100.0%
1m2xA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.60 40.0 2.93e-01 70.1% 30.1%
3tdgA01 3.10.450.520 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 37.0 3.95e-01 77.9% 72.7%
5fgoA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 42.0 4.54e-01 77.9% 91.9%
4n4bA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.59 49.0 3.24e-01 89.6% 79.3%
4m7dA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 46.0 4.98e-01 96.1% 98.5%
3omlA03 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.59 41.0 2.85e-01 72.7% 92.3%
2jobA00 3.30.160.320 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 47.0 4.34e-01 90.9% 86.3%
4l3rA00 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.57 46.0 3.83e-01 90.9% 99.3%
7lt2A01 3.30.460.90 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › 0.57 40.0 2.85e-01 74.0% 66.9%
1nqnA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.57 45.0 4.00e-01 89.6% 99.2%
4h5bA00 3.30.1460.70 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.57 46.0 3.78e-01 92.2% 91.4%
4exrA02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 41.0 4.23e-01 76.6% 98.6%
4exrA01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 41.0 4.08e-01 77.9% 86.4%
1y5oA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 43.0 3.83e-01 85.7% 82.6%
4f7uG00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 43.0 4.59e-01 93.5% 95.6%
2k50A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 38.0 3.45e-01 71.4% 65.4%
1w0pA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 48.0 3.73e-01 100.0% 61.0%
1a1xA00 2.40.15.10 Mainly Beta › Beta Barrel › Proto-oncogene - Oncogene Product P14tcl1 › TCL1/MTCP1 0.54 38.0 3.47e-01 74.0% 89.6%
1zs7A01 3.10.450.120 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1 0.54 40.0 3.66e-01 79.2% 98.1%
6eugA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 46.0 2.99e-01 93.5% 80.4%
3sreA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.54 50.0 3.21e-01 100.0% 62.9%
3n6rA03 3.30.700.30 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › 0.54 44.0 3.77e-01 92.2% 82.7%
4innA00 2.40.128.520 Mainly Beta › Beta Barrel › Lipocalin › 0.54 42.0 3.54e-01 88.3% 81.5%
7erlA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 46.0 3.63e-01 100.0% 67.6%
6asoH00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 39.0 3.88e-01 92.2% 72.3%
4ffeX00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.54 36.0 3.01e-01 70.1% 89.3%
2b7uA01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.54 42.0 3.28e-01 83.1% 61.3%
3payB02 2.60.40.2090 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 39.0 3.36e-01 77.9% 89.4%
5z5dA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 46.0 3.51e-01 100.0% 81.4%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.53 43.0 2.86e-01 92.2% 77.1%
4hfsA00 2.60.120.1270 Mainly Beta › Sandwich › Jelly Rolls › 0.53 45.0 3.45e-01 100.0% 64.0%
4m78N00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 40.0 4.19e-01 94.8% 88.7%
3k1lA01 3.30.457.40 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.53 41.0 3.96e-01 87.0% 87.0%
3zxkA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 45.0 3.38e-01 100.0% 63.4%
5jozB02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 46.0 3.45e-01 100.0% 59.8%
4c92G00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 42.0 4.31e-01 96.1% 90.7%
3isxA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.52 44.0 4.26e-01 92.2% 100.0%
4lqzA00 2.40.128.570 Mainly Beta › Beta Barrel › Lipocalin › Protein of unknown function DUF4909 0.52 39.0 3.42e-01 84.4% 91.6%
1e2rA02 2.140.10.20 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 0.52 42.0 2.71e-01 93.5% 84.7%
1ei5A01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.52 38.0 2.56e-01 79.2% 19.3%
3ilvA01 3.60.110.10 Alpha Beta › 4-Layer Sandwich › Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase › Carbon-nitrogen hydrolase 0.51 43.0 3.11e-01 100.0% 93.7%
3hi2B00 3.30.2310.40 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › 0.50 40.0 3.69e-01 85.7% 100.0%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3631990 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.68 56.0 4.33e-01 88.3% 67.3%
3199320 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.67 55.0 4.80e-01 89.6% 93.9%
4279385 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.67 55.0 4.96e-01 89.6% 91.4%
3657329 6.1.1.25 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › DUF569 0.66 52.0 4.14e-01 85.7% 99.4%
3999576 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.65 52.0 4.26e-01 88.3% 84.1%
5071733 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.65 49.0 4.70e-01 81.8% 70.0%
1842572 6.1.1.6 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Lipoprotein_11 0.64 49.0 3.96e-01 83.1% 100.0%
3649955 6.1.1.12 ↗ beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Agglutinin 0.64 50.0 4.00e-01 85.7% 87.5%
3261845 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.64 49.0 3.20e-01 84.4% 94.0%
3910727 4.1.1.353 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_TNRC18 0.62 48.0 5.13e-01 93.5% 100.0%
3411333 3131.1.1.1 ↗ a+b two layers › FYR domain › FYR domain › FYR domain › FYRN,FYRC 0.61 54.0 4.27e-01 97.4% 97.4%
3248039 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 43.0 4.02e-01 80.5% 58.0%
4389184 11.1.1.1065 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF25971 0.60 45.0 4.11e-01 80.5% 90.5%
3796352 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.60 43.0 4.57e-01 74.0% 92.3%
3499167 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 48.0 3.10e-01 85.7% 84.0%
3577505 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 44.0 4.32e-01 98.7% 71.8%
1120986 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.59 46.0 4.94e-01 96.1% 95.5%
3279607 9.3.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like 0.59 46.0 4.25e-01 85.7% 97.0%
3670362 5.1.4.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.59 48.0 3.02e-01 89.6% 37.8%
3737835 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.59 45.0 4.19e-01 84.4% 87.0%
5047148 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.59 51.0 3.36e-01 97.4% 86.7%
None — 0.58 45.0 3.16e-01 81.8% 77.4%
3444588 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.58 48.0 3.14e-01 93.5% 82.7%
3589823 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.58 42.0 4.52e-01 77.9% 92.3%
3581143 4.1.1.43 ↗ beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.57 40.0 4.27e-01 89.6% 84.6%
4827332 109.4.1.41 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Lipoprotein_11 0.57 48.0 3.98e-01 96.1% 99.3%
5056748 5.1.3.40 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylsulfotran_2 0.57 48.0 3.15e-01 96.1% 76.5%
3802472 5.1.3.144 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.57 50.0 3.36e-01 98.7% 97.0%
3903515 511.1.1.0 ↗ beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain 0.57 43.0 3.43e-01 80.5% 91.0%
3510695 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.57 44.0 4.38e-01 85.7% 81.2%
3924601 5.1.5.18 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Vps16_N 0.57 43.0 2.92e-01 84.4% 82.8%
3597078 10.1.1.35 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_3 0.57 49.0 3.74e-01 100.0% 61.0%
3965259 243.3.1.16 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › PepSY_2 0.57 42.0 4.31e-01 77.9% 100.0%
3415592 241.15.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N 0.56 45.0 3.66e-01 88.3% 66.7%
5003044 316.1.1.2 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase › NTP_transf_2 0.55 46.0 3.40e-01 90.9% 43.0%
3320161 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 47.0 3.03e-01 94.8% 48.4%
3950242 222.1.1.1 ↗ a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydratas 0.55 40.0 3.41e-01 77.9% 77.7%
3673032 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 40.0 4.16e-01 80.5% 85.7%
4945471 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.54 42.0 4.47e-01 97.4% 100.0%
3466098 5.1.4.101 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › DUF1618 0.54 43.0 2.89e-01 88.3% 61.3%
3935899 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 45.0 2.98e-01 96.1% 72.5%
3529982 5.1.4.156 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Ge1_WD40 0.53 42.0 2.68e-01 90.9% 73.4%
3457141 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.53 48.0 3.16e-01 100.0% 75.9%
3510850 3459.1.1.0 ↗ beta sandwiches › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule › Fas apoptotic inhibitory molecule 0.53 40.0 3.86e-01 83.1% 96.7%
3333322 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.53 44.0 3.65e-01 98.7% 51.9%
4358801 4.1.1.178 ↗ beta barrels › SH3 › SH3 › SH3 › ribosomal_L24 0.52 39.0 3.43e-01 77.9% 100.0%
3412178 4184.1.1.1 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › DM9 0.52 36.0 3.75e-01 83.1% 79.7%
3671668 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.52 37.0 2.92e-01 77.9% 83.2%
3485288 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.51 45.0 3.37e-01 100.0% 88.0%
3483269 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.51 35.0 3.67e-01 83.1% 78.6%
3644145 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.51 45.0 2.97e-01 100.0% 97.9%
3266673 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 45.0 2.96e-01 100.0% 80.3%
3567647 5.1.4.15 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RPE65 0.50 43.0 2.65e-01 100.0% 91.9%
None — 0.50 44.0 2.81e-01 100.0% 69.1%
3482663 4184.1.1.0 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat 0.50 34.0 3.59e-01 83.1% 78.6%
3330259 5.1.3.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.50 43.0 3.02e-01 100.0% 98.2%