YP_009798571.1

Arc-Vir

NC_047928__YP_009798571.1__HOS82-gp08__00008

Identity

Accession:: NC_047928 ↗
Protein ID:: YP_009798571.1 ↗
Kingdom:: archaea

Quality

90.0 mean pLDDT

Taxonomy

Trapavirae› Saleviricota› Huolimaviricetes› Haloruvirales› Pleolipoviridae› Betapleolipovirus› Haloarcula_hispanica_pleomorphic_virus_3

TaxID: 1879051

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-161

PDB

Domain cluster: representative

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
7cayA01	2.30.130.40	Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like	0.60	39.0	4.60e-01	92.7%	98.0%
2x8kA01	2.40.30.200	Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 ›	0.57	38.0	4.31e-01	98.0%	94.3%
1ev7A01	3.40.600.10	Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › DNA mismatch repair MutH/Restriction endonuclease, type II	0.57	31.0	3.02e-01	78.8%	46.1%
4ci2B02	2.30.130.40	Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like	0.56	39.0	4.18e-01	95.4%	84.0%
2gmqA00	2.40.450.10	Mainly Beta › Beta Barrel › PUA domain-like fold › PUA domain-like domain	0.56	36.0	4.20e-01	78.8%	96.0%
6vbkA01	2.30.130.40	Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like	0.54	38.0	4.23e-01	92.7%	97.3%
2o30A00	2.60.40.790	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.53	29.0	3.72e-01	84.1%	97.6%
1wv4B00	2.30.110.10	Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A	0.52	37.0	3.72e-01	99.3%	72.1%
2xcmC00	2.60.40.790	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.51	31.0	3.75e-01	75.5%	97.8%
1x5mA01	2.60.40.790	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.51	33.0	3.86e-01	78.1%	94.3%
4rzkA00	2.60.40.790	Mainly Beta › Sandwich › Immunoglobulin-like ›	0.50	28.0	3.51e-01	96.7%	92.0%

ECOD (12)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5018418	1.1.9.50 ↗	beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF28530	0.74	68.0	6.66e-01	98.0%	96.9%
4938797	1.1.9.50 ↗	beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF28530	0.73	66.0	6.54e-01	96.7%	99.4%
5004529	1.1.9.50 ↗	beta barrels › cradle loop barrel › RIFT-related › PUA domain › PF28530	0.73	53.0	6.03e-01	96.7%	99.1%
5067380	1.1.9.0 ↗	beta barrels › cradle loop barrel › RIFT-related › PUA domain	0.59	43.0	4.52e-01	96.7%	82.1%
4646862	1.1.5.26 ↗	beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZN	0.57	33.0	3.73e-01	74.2%	76.4%
5013988	2008.1.1.0 ↗	a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like	0.56	35.0	3.79e-01	92.7%	73.1%
3967003	1.1.13.35 ↗	beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_TTP_11	0.53	38.0	3.92e-01	72.8%	91.4%
4674311	225.1.1.3 ↗	a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c	0.52	37.0	3.68e-01	96.7%	69.7%
3909234	214.1.1.1 ↗	a+b two layers › SH2 › SH2 › SH2 › SH2	0.52	31.0	3.51e-01	94.0%	77.4%
4399129	864.1.1.9 ↗	a+b two layers › DLC › DLC › DLC › DUF7888	0.52	31.0	3.53e-01	82.8%	78.3%
3511358	1.1.13.0 ↗	beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins	0.51	33.0	3.92e-01	100.0%	98.0%
3279076	225.1.1.3 ↗	a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HATPase_c	0.51	38.0	3.61e-01	98.0%	66.7%